Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SMC1BQ8NDV3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 RNF216P1-203ENST00000404404 2427 ntBASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 CCL25-202ENST00000315626 450 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AC006529.1-201ENST00000459978 637 ntBASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AC092612.1-201ENST00000514501 998 ntBASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 ME2P1-201ENST00000426028 1970 ntBASIC17.48■□□□□ 0.39
SMC1BQ8NDV3 AC063926.3-201ENST00000624734 5658 ntBASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 AHCYP4-201ENST00000419201 1315 ntBASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 JPT2-203ENST00000382711 894 ntTSL 4 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 KRT18P36-201ENST00000411618 1276 ntBASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 AC108734.2-201ENST00000420887 1069 ntBASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 ALG1L3P-201ENST00000503331 765 ntBASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 ALG3P1-201ENST00000508806 1114 ntBASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMC1BQ8NDV3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
SMC1BQ8NDV3 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms