Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AL672207.1-201ENST00000328462 1570 ntBASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 PYY2-201ENST00000315776 282 ntBASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AC108734.2-201ENST00000420887 1069 ntBASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 RNA5SP406-201ENST00000516106 112 ntBASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AC006504.5-208ENST00000588784 2401 ntBASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT28Q7Z3Y7 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 ACTBP7-201ENST00000418351 1124 ntBASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 DGAT2L7P-201ENST00000602462 744 ntBASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 AC018695.6-201ENST00000614011 534 ntBASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT28Q7Z3Y7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 RN7SL23P-201ENST00000484055 275 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 PEBP1P2-201ENST00000603980 558 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 AL118522.1-201ENST00000611368 560 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 HMGB1P24-201ENST00000611897 328 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 AL591471.1-201ENST00000621855 229 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 LINC00244-201ENST00000625073 613 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 AC126365.1-201ENST00000578585 1514 ntBASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
KRT28Q7Z3Y7 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms