Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.39□□□□□ -0.27
CLRN1P58418 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
CLRN1P58418 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.39□□□□□ -0.27
CLRN1P58418 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CLRN1P58418 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CLRN1P58418 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.38□□□□□ -0.27
CLRN1P58418 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CLRN1P58418 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.38□□□□□ -0.27
CLRN1P58418 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.38□□□□□ -0.27
CLRN1P58418 EIF3FP3-201ENST00000434851 1086 ntBASIC13.38□□□□□ -0.27
CLRN1P58418 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.38□□□□□ -0.27
CLRN1P58418 AC011495.1-201ENST00000498085 584 ntBASIC13.38□□□□□ -0.27
CLRN1P58418 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 TDH-203ENST00000531764 1110 ntBASIC13.38□□□□□ -0.27
CLRN1P58418 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 PTP4A1P2-201ENST00000546033 454 ntBASIC13.38□□□□□ -0.27
CLRN1P58418 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.38□□□□□ -0.27
CLRN1P58418 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.38□□□□□ -0.27
CLRN1P58418 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.38□□□□□ -0.27
CLRN1P58418 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.38□□□□□ -0.27
CLRN1P58418 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.38□□□□□ -0.27
CLRN1P58418 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.38□□□□□ -0.27
CLRN1P58418 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CLRN1P58418 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CLRN1P58418 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.38□□□□□ -0.27
CLRN1P58418 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CLRN1P58418 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CLRN1P58418 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.37□□□□□ -0.27
CLRN1P58418 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.37□□□□□ -0.27
CLRN1P58418 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CLRN1P58418 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 AC098614.1-201ENST00000368528 745 ntBASIC13.37□□□□□ -0.27
CLRN1P58418 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
CLRN1P58418 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 RN7SL752P-201ENST00000463779 287 ntBASIC13.37□□□□□ -0.27
CLRN1P58418 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.37□□□□□ -0.27
CLRN1P58418 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.37□□□□□ -0.27
CLRN1P58418 AC138761.1-201ENST00000584393 385 ntBASIC13.37□□□□□ -0.27
CLRN1P58418 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms