Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC20.22■□□□□ 0.83
MSH6P52701 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH6P52701 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
MSH6P52701 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 KRT8P28-201ENST00000433288 1390 ntBASIC20.21■□□□□ 0.83
MSH6P52701 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH6P52701 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 AL929302.1-201ENST00000426556 871 ntBASIC20.21■□□□□ 0.83
MSH6P52701 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
MSH6P52701 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH6P52701 ALG1L3P-201ENST00000503331 765 ntBASIC20.21■□□□□ 0.83
MSH6P52701 AC068831.5-201ENST00000557387 328 ntBASIC20.21■□□□□ 0.83
MSH6P52701 TRMT112P3-201ENST00000580149 358 ntBASIC20.21■□□□□ 0.83
MSH6P52701 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH6P52701 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
MSH6P52701 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH6P52701 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH6P52701 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH6P52701 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.21■□□□□ 0.83
MSH6P52701 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH6P52701 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
MSH6P52701 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
MSH6P52701 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH6P52701 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH6P52701 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH6P52701 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC20.21■□□□□ 0.83
MSH6P52701 AC092580.1-201ENST00000433998 658 ntBASIC20.21■□□□□ 0.83
MSH6P52701 AC023906.1-201ENST00000486386 453 ntBASIC20.21■□□□□ 0.83
MSH6P52701 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH6P52701 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC20.21■□□□□ 0.83
MSH6P52701 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH6P52701 EMC4-208ENST00000559078 599 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH6P52701 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC20.21■□□□□ 0.83
MSH6P52701 AC124068.2-201ENST00000569473 1109 ntBASIC20.21■□□□□ 0.83
MSH6P52701 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
MSH6P52701 ELP5-212ENST00000574255 671 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH6P52701 AC233280.19-201ENST00000633223 136 ntBASIC20.21■□□□□ 0.83
MSH6P52701 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH6P52701 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
MSH6P52701 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
MSH6P52701 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 AL451000.1-201ENST00000451300 1186 ntBASIC20.2■□□□□ 0.82
MSH6P52701 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC20.2■□□□□ 0.82
MSH6P52701 OR2A1-AS1-210ENST00000496968 531 ntBASIC20.2■□□□□ 0.82
MSH6P52701 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC20.2■□□□□ 0.82
MSH6P52701 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 AC018846.1-201ENST00000568231 183 ntBASIC20.2■□□□□ 0.82
MSH6P52701 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC20.2■□□□□ 0.82
MSH6P52701 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH6P52701 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH6P52701 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH6P52701 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 180.6 ms