Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 MEP1AP4-201ENST00000423244 1087 ntBASIC15.82■□□□□ 0.12
LIG3P49916 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.82■□□□□ 0.12
LIG3P49916 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.82■□□□□ 0.12
LIG3P49916 AC140912.1-201ENST00000577171 1054 ntBASIC15.82■□□□□ 0.12
LIG3P49916 CHCHD2P3-201ENST00000603038 451 ntBASIC15.82■□□□□ 0.12
LIG3P49916 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.82■□□□□ 0.12
LIG3P49916 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
LIG3P49916 AC025048.6-201ENST00000634326 1161 ntBASIC15.82■□□□□ 0.12
LIG3P49916 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 AL607033.1-201ENST00000623900 1599 ntBASIC15.82■□□□□ 0.12
LIG3P49916 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LIG3P49916 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIG3P49916 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LIG3P49916 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
LIG3P49916 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.81■□□□□ 0.12
LIG3P49916 AC055876.2-201ENST00000531834 546 ntBASIC15.81■□□□□ 0.12
LIG3P49916 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
LIG3P49916 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 TP53TG3HP-202ENST00000569755 579 ntBASIC15.81■□□□□ 0.12
LIG3P49916 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.81■□□□□ 0.12
LIG3P49916 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
LIG3P49916 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIG3P49916 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LIG3P49916 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LIG3P49916 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.81■□□□□ 0.12
LIG3P49916 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 AC023024.2-201ENST00000623561 1993 ntBASIC15.8■□□□□ 0.12
LIG3P49916 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms