Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 KRT18P13-201ENST00000400056 1290 ntBASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 SPDYE18-201ENST00000510091 1050 ntBASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AL590560.3-201ENST00000623350 461 ntBASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM49D1C9J1S8 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 FAM86LP-201ENST00000478302 853 ntBASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AC097493.3-201ENST00000509725 367 ntBASIC15□□□□□ -0.01
TRIM49D1C9J1S8 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AC087386.2-201ENST00000623212 4637 ntBASIC15□□□□□ -0.01
TRIM49D1C9J1S8 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15□□□□□ -0.01
TRIM49D1C9J1S8 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRIM49D1C9J1S8 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms