Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC016694.1-201ENST00000434179 700 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC244107.1-201ENST00000442033 332 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AL590640.2-201ENST00000457038 527 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC007551.1-201ENST00000457394 519 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ACA64.2-201ENST00000459014 129 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 RAB43P1-201ENST00000561790 589 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC005912.2-201ENST00000619492 2400 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC020910.5-201ENST00000623668 1865 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC097359.2-201ENST00000604992 2389 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AC011840.2-201ENST00000563063 1520 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 FAM197Y7-201ENST00000432892 766 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 ATP5G2P4-201ENST00000442175 420 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 CROCCP4-201ENST00000457096 498 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 RNA5SP486-201ENST00000515961 83 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 IGHV3-71-201ENST00000523324 359 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AC138696.2-201ENST00000607376 223 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 FAM45BP-202ENST00000592932 1624 ntBASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
ATG4BQ9Y4P1 FKBP4P6-201ENST00000457486 1332 ntBASIC14.15□□□□□ -0.15
ATG4BQ9Y4P1 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4BQ9Y4P1 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4BQ9Y4P1 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
ATG4BQ9Y4P1 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 AP001267.2-201ENST00000532619 2086 ntBASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
ATG4BQ9Y4P1 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms