Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
USP28Q96RU2 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 KRT8P35-201ENST00000483942 1338 ntBASIC17.07■□□□□ 0.32
USP28Q96RU2 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
USP28Q96RU2 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.07■□□□□ 0.32
USP28Q96RU2 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 AC087499.6-201ENST00000411576 835 ntBASIC17.07■□□□□ 0.32
USP28Q96RU2 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.07■□□□□ 0.32
USP28Q96RU2 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.07■□□□□ 0.32
USP28Q96RU2 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 RN7SL204P-201ENST00000582831 262 ntBASIC17.07■□□□□ 0.32
USP28Q96RU2 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 LINC02560-201ENST00000596379 459 ntBASIC17.07■□□□□ 0.32
USP28Q96RU2 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP28Q96RU2 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.07■□□□□ 0.32
USP28Q96RU2 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC17.07■□□□□ 0.32
USP28Q96RU2 MST1P2-201ENST00000457982 2291 ntBASIC17.07■□□□□ 0.32
USP28Q96RU2 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.06■□□□□ 0.32
USP28Q96RU2 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.06■□□□□ 0.32
USP28Q96RU2 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.06■□□□□ 0.32
USP28Q96RU2 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.06■□□□□ 0.32
USP28Q96RU2 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 AC022137.2-201ENST00000503482 481 ntBASIC17.06■□□□□ 0.32
USP28Q96RU2 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
USP28Q96RU2 ENPP7P5-201ENST00000541031 1031 ntBASIC17.06■□□□□ 0.32
USP28Q96RU2 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 AP001063.1-201ENST00000568332 529 ntBASIC17.06■□□□□ 0.32
USP28Q96RU2 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USP28Q96RU2 CU634019.7-201ENST00000624153 1185 ntBASIC17.06■□□□□ 0.32
USP28Q96RU2 FP236241.2-201ENST00000624906 1185 ntBASIC17.06■□□□□ 0.32
USP28Q96RU2 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
USP28Q96RU2 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USP28Q96RU2 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
USP28Q96RU2 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USP28Q96RU2 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 RN7SL832P-201ENST00000607781 1756 ntBASIC17.05■□□□□ 0.32
USP28Q96RU2 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USP28Q96RU2 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 179.6 ms