Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AC026316.1-201ENST00000398900 414 ntBASIC14.43□□□□□ -0.1
COL28A1Q2UY09 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 CEP164P1-201ENST00000455142 418 ntBASIC14.43□□□□□ -0.1
COL28A1Q2UY09 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AC012044.1-201ENST00000603431 297 ntBASIC14.43□□□□□ -0.1
COL28A1Q2UY09 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AL353770.1-201ENST00000614915 403 ntBASIC14.43□□□□□ -0.1
COL28A1Q2UY09 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.42□□□□□ -0.1
COL28A1Q2UY09 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.42□□□□□ -0.1
COL28A1Q2UY09 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 FAU-202ENST00000434372 533 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AL157792.1-201ENST00000488281 530 ntBASIC14.42□□□□□ -0.1
COL28A1Q2UY09 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 AC092127.1-201ENST00000567093 3455 ntBASIC14.42□□□□□ -0.1
COL28A1Q2UY09 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.42□□□□□ -0.1
COL28A1Q2UY09 SNX18-202ENST00000343017 3140 ntBASIC14.42□□□□□ -0.1
COL28A1Q2UY09 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL28A1Q2UY09 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 AL121723.1-201ENST00000445194 1519 ntBASIC14.41□□□□□ -0.1
COL28A1Q2UY09 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL28A1Q2UY09 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms