Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PDIA3P1-201ENST00000471856 1510 ntBASIC14.19□□□□□ -0.14
LIM2P55344 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.19□□□□□ -0.14
LIM2P55344 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.19□□□□□ -0.14
LIM2P55344 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LIM2P55344 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
LIM2P55344 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LIM2P55344 AC003102.2-201ENST00000589195 1469 ntBASIC14.18□□□□□ -0.14
LIM2P55344 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 AP001267.2-201ENST00000532619 2086 ntBASIC14.18□□□□□ -0.14
LIM2P55344 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.18□□□□□ -0.14
LIM2P55344 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.18□□□□□ -0.14
LIM2P55344 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.18□□□□□ -0.14
LIM2P55344 TLE1P1-201ENST00000422965 589 ntBASIC14.18□□□□□ -0.14
LIM2P55344 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.18□□□□□ -0.14
LIM2P55344 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.18□□□□□ -0.14
LIM2P55344 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.18□□□□□ -0.14
LIM2P55344 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.18□□□□□ -0.14
LIM2P55344 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.18□□□□□ -0.14
LIM2P55344 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.18□□□□□ -0.14
LIM2P55344 AC138951.2-201ENST00000623455 1161 ntBASIC14.18□□□□□ -0.14
LIM2P55344 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 SALL4P5-201ENST00000419001 1760 ntBASIC14.18□□□□□ -0.14
LIM2P55344 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.18□□□□□ -0.14
LIM2P55344 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
LIM2P55344 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LIM2P55344 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 AC113367.3-201ENST00000508316 1912 ntBASIC14.17□□□□□ -0.14
LIM2P55344 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LIM2P55344 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LIM2P55344 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.17□□□□□ -0.14
LIM2P55344 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
LIM2P55344 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.17□□□□□ -0.14
LIM2P55344 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 CD8B2-202ENST00000417670 633 ntBASIC14.17□□□□□ -0.14
LIM2P55344 GPR53P-205ENST00000457298 1084 ntBASIC14.17□□□□□ -0.14
LIM2P55344 ACA64.2-201ENST00000459014 129 ntBASIC14.17□□□□□ -0.14
LIM2P55344 FTLP10-202ENST00000505798 471 ntBASIC14.17□□□□□ -0.14
LIM2P55344 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.17□□□□□ -0.14
LIM2P55344 AP000812.2-201ENST00000538934 718 ntBASIC14.17□□□□□ -0.14
LIM2P55344 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.17□□□□□ -0.14
LIM2P55344 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 AC239800.4-201ENST00000603712 296 ntBASIC14.17□□□□□ -0.14
LIM2P55344 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.17□□□□□ -0.14
LIM2P55344 AC006453.4-201ENST00000636949 1252 ntBASIC14.17□□□□□ -0.14
LIM2P55344 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.17□□□□□ -0.14
LIM2P55344 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms