Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AC025181.2-201ENST00000606994 802 ntBASIC13.79□□□□□ -0.2
CDH11P55287 AC007431.3-201ENST00000623221 587 ntBASIC13.79□□□□□ -0.2
CDH11P55287 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.79□□□□□ -0.2
CDH11P55287 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.79□□□□□ -0.2
CDH11P55287 AC152010.1-201ENST00000415779 2006 ntBASIC13.79□□□□□ -0.2
CDH11P55287 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.79□□□□□ -0.2
CDH11P55287 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
CDH11P55287 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.79□□□□□ -0.2
CDH11P55287 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.79□□□□□ -0.2
CDH11P55287 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.79□□□□□ -0.2
CDH11P55287 AC015802.1-201ENST00000588104 1449 ntBASIC13.79□□□□□ -0.2
CDH11P55287 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.79□□□□□ -0.2
CDH11P55287 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.79□□□□□ -0.2
CDH11P55287 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CDH11P55287 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CDH11P55287 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
CDH11P55287 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.78□□□□□ -0.2
CDH11P55287 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.78□□□□□ -0.2
CDH11P55287 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 AP006294.1-201ENST00000415407 339 ntBASIC13.78□□□□□ -0.2
CDH11P55287 COX5BP8-201ENST00000416911 349 ntBASIC13.78□□□□□ -0.2
CDH11P55287 MEP1AP4-201ENST00000423244 1087 ntBASIC13.78□□□□□ -0.2
CDH11P55287 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.78□□□□□ -0.2
CDH11P55287 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.78□□□□□ -0.2
CDH11P55287 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.78□□□□□ -0.2
CDH11P55287 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.78□□□□□ -0.2
CDH11P55287 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 TIMM17BP1-201ENST00000545713 516 ntBASIC13.78□□□□□ -0.2
CDH11P55287 CR383656.12-201ENST00000549567 513 ntBASIC13.78□□□□□ -0.2
CDH11P55287 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.78□□□□□ -0.2
CDH11P55287 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.78□□□□□ -0.2
CDH11P55287 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 AC004790.1-201ENST00000612686 536 ntBASIC13.78□□□□□ -0.2
CDH11P55287 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CDH11P55287 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 CU639417.3-201ENST00000624240 1404 ntBASIC13.78□□□□□ -0.2
CDH11P55287 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 AC092135.3-201ENST00000624151 1846 ntBASIC13.78□□□□□ -0.2
CDH11P55287 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH11P55287 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CDH11P55287 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.78□□□□□ -0.2
CDH11P55287 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.77□□□□□ -0.2
CDH11P55287 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CDH11P55287 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CDH11P55287 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CDH11P55287 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CDH11P55287 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.77□□□□□ -0.21
CDH11P55287 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 AC098614.1-201ENST00000368528 745 ntBASIC13.77□□□□□ -0.21
CDH11P55287 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CDH11P55287 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH11P55287 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms