Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 NAV1-210ENST00000593583 726 ntBASIC20.25■□□□□ 0.83
MSH6P52701 LINC00244-201ENST00000625073 613 ntBASIC20.25■□□□□ 0.83
MSH6P52701 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH6P52701 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH6P52701 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
MSH6P52701 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH6P52701 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH6P52701 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH6P52701 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH6P52701 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
MSH6P52701 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MSH6P52701 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC20.24■□□□□ 0.83
MSH6P52701 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 AF274858.1-201ENST00000406288 372 ntBASIC20.24■□□□□ 0.83
MSH6P52701 AC098934.1-203ENST00000442868 1262 ntBASIC20.24■□□□□ 0.83
MSH6P52701 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC20.24■□□□□ 0.83
MSH6P52701 GOLGA2P7-209ENST00000560408 745 ntBASIC20.24■□□□□ 0.83
MSH6P52701 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH6P52701 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC20.24■□□□□ 0.83
MSH6P52701 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH6P52701 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MSH6P52701 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH6P52701 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
MSH6P52701 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MSH6P52701 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
MSH6P52701 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
MSH6P52701 NHP2P1-201ENST00000335274 462 ntBASIC20.23■□□□□ 0.83
MSH6P52701 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH6P52701 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC20.23■□□□□ 0.83
MSH6P52701 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC20.23■□□□□ 0.83
MSH6P52701 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC20.23■□□□□ 0.83
MSH6P52701 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
MSH6P52701 AC004686.1-201ENST00000605113 538 ntBASIC20.23■□□□□ 0.83
MSH6P52701 AC008972.2-201ENST00000606587 494 ntBASIC20.23■□□□□ 0.83
MSH6P52701 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC20.23■□□□□ 0.83
MSH6P52701 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 AL109809.1-201ENST00000418979 1367 ntBASIC20.23■□□□□ 0.83
MSH6P52701 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC20.23■□□□□ 0.83
MSH6P52701 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MSH6P52701 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
MSH6P52701 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
MSH6P52701 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH6P52701 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 R3HDM2P2-201ENST00000401880 2116 ntBASIC20.22■□□□□ 0.83
MSH6P52701 NME6-208ENST00000435684 599 ntTSL 2 BASIC20.22■□□□□ 0.83
MSH6P52701 RPL3P5-201ENST00000441645 1232 ntBASIC20.22■□□□□ 0.83
MSH6P52701 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC20.22■□□□□ 0.83
MSH6P52701 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
MSH6P52701 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC20.22■□□□□ 0.83
MSH6P52701 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC20.22■□□□□ 0.83
MSH6P52701 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC20.22■□□□□ 0.83
MSH6P52701 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
MSH6P52701 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH6P52701 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms