Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FTH1-204ENST00000529548 567 ntTSL 313.17□□□□□ -0.35e-63■□□□□ 9.3
YBX3P16989 EEF2-206ENST00000600720 573 ntTSL 323.39■■□□□ 1.334e-68■□□□□ 9.3
YBX3P16989 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC12.71□□□□□ -0.382e-58■□□□□ 9.3
YBX3P16989 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC12.44□□□□□ -0.422e-58■□□□□ 9.3
YBX3P16989 FN1-206ENST00000359671 8524 ntTSL 5 BASIC12.21□□□□□ -0.452e-58■□□□□ 9.3
YBX3P16989 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC11.93□□□□□ -0.52e-58■□□□□ 9.3
YBX3P16989 FN1-204ENST00000356005 7846 ntTSL 1 (best) BASIC11.52□□□□□ -0.572e-58■□□□□ 9.3
YBX3P16989 FN1-211ENST00000443816 7762 ntTSL 1 (best) BASIC11.48□□□□□ -0.572e-58■□□□□ 9.3
YBX3P16989 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC11.31□□□□□ -0.62e-58■□□□□ 9.3
YBX3P16989 FN1-205ENST00000357867 7898 ntTSL 1 (best) BASIC11.24□□□□□ -0.612e-58■□□□□ 9.3
YBX3P16989 FN1-203ENST00000354785 8905 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.622e-58■□□□□ 9.3
YBX3P16989 FN1-209ENST00000432072 7759 ntTSL 1 (best) BASIC10.2□□□□□ -0.782e-58■□□□□ 9.3
YBX3P16989 CIZ1-220ENST00000485862 843 ntTSL 220.66■□□□□ 0.91e-9■□□□□ 9.3
YBX3P16989 CIZ1-222ENST00000491487 339 ntTSL 219.25■□□□□ 0.671e-9■□□□□ 9.3
YBX3P16989 CIZ1-210ENST00000461765 677 ntTSL 312.35□□□□□ -0.431e-9■□□□□ 9.3
YBX3P16989 CIZ1-212ENST00000471773 717 ntTSL 210.38□□□□□ -0.751e-9■□□□□ 9.3
YBX3P16989 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.999e-9■□□□□ 9.3
YBX3P16989 KDM3B-207ENST00000510866 6324 ntTSL 1 (best)7.37□□□□□ -1.239e-9■□□□□ 9.3
YBX3P16989 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.66□□□□□ -1.59e-9■□□□□ 9.3
YBX3P16989 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.661e-11■□□□□ 9.3
YBX3P16989 RPS27A-206ENST00000468810 597 ntTSL 312.68□□□□□ -0.388e-11■□□□□ 9.3
YBX3P16989 PHGDH-230ENST00000641927 1678 nt21.2■□□□□ 0.983e-7■□□□□ 9.3
YBX3P16989 PHGDH-226ENST00000641756 2132 nt19.33■□□□□ 0.693e-7■□□□□ 9.3
YBX3P16989 PHGDH-201ENST00000369407 3180 ntTSL 212.32□□□□□ -0.443e-7■□□□□ 9.3
YBX3P16989 OAZ1-206ENST00000589739 657 ntTSL 222.34■■□□□ 1.171e-28■□□□□ 9.3
YBX3P16989 ASF1B-203ENST00000589468 587 ntTSL 326.43■■□□□ 1.827e-8■□□□□ 9.3
YBX3P16989 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC24.29■■□□□ 1.487e-8■□□□□ 9.3
YBX3P16989 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.47■■□□□ 1.037e-8■□□□□ 9.3
YBX3P16989 ASF1B-204ENST00000590835 746 ntTSL 521.29■■□□□ 17e-8■□□□□ 9.3
YBX3P16989 HNRNPUL1-214ENST00000599719 1473 ntTSL 1 (best)17.69■□□□□ 0.423e-8■□□□□ 9.3
YBX3P16989 HNRNPUL1-217ENST00000600596 581 ntTSL 513.82□□□□□ -0.23e-8■□□□□ 9.3
YBX3P16989 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC33.76■■■□□ 2.992e-33■□□□□ 9.3
YBX3P16989 RANBP1-207ENST00000423859 832 ntTSL 324.22■■□□□ 1.472e-33■□□□□ 9.3
YBX3P16989 RANBP1-210ENST00000435265 1879 ntTSL 223.09■■□□□ 1.292e-33■□□□□ 9.3
YBX3P16989 RANBP1-205ENST00000418705 932 ntTSL 322.26■■□□□ 1.152e-33■□□□□ 9.3
YBX3P16989 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.842e-33■□□□□ 9.3
YBX3P16989 RANBP1-203ENST00000411892 584 ntTSL 219.2■□□□□ 0.662e-33■□□□□ 9.3
YBX3P16989 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.91■□□□□ 0.462e-33■□□□□ 9.3
YBX3P16989 PHKB-207ENST00000566037 1032 ntTSL 231.09■■■□□ 2.574e-9■□□□□ 9.3
YBX3P16989 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.14e-9■□□□□ 9.3
YBX3P16989 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.824e-9■□□□□ 9.3
YBX3P16989 PHKB-203ENST00000563376 697 ntTSL 317.58■□□□□ 0.44e-9■□□□□ 9.3
YBX3P16989 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.074e-9■□□□□ 9.3
YBX3P16989 ANKLE2-207ENST00000539605 10890 ntTSL 1 (best)14.54□□□□□ -0.084e-9■□□□□ 9.3
YBX3P16989 DAZAP1-207ENST00000589484 3414 ntTSL 213.84□□□□□ -0.192e-10■□□□□ 9.3
YBX3P16989 DAZAP1-206ENST00000587833 560 ntTSL 513.7□□□□□ -0.222e-10■□□□□ 9.3
YBX3P16989 PHKB-217ENST00000570047 797 ntTSL 312.46□□□□□ -0.414e-9■□□□□ 9.3
YBX3P16989 PHKB-214ENST00000567402 1617 ntTSL 1 (best)11.78□□□□□ -0.524e-9■□□□□ 9.3
YBX3P16989 MED8-205ENST00000473560 979 ntTSL 310.31□□□□□ -0.764e-9■□□□□ 9.3
YBX3P16989 MED8-204ENST00000460803 710 ntTSL 29.55□□□□□ -0.884e-9■□□□□ 9.3
YBX3P16989 NET1-205ENST00000484741 757 ntTSL 29.15□□□□□ -0.944e-9■□□□□ 9.3
YBX3P16989 PHKB-206ENST00000565424 828 ntTSL 37.9□□□□□ -1.144e-9■□□□□ 9.3
YBX3P16989 EIF4A2-217ENST00000475409 802 ntTSL 26.48□□□□□ -1.371e-13■□□□□ 9.3
YBX3P16989 EIF4A2-213ENST00000465792 734 ntTSL 26.4□□□□□ -1.381e-13■□□□□ 9.3
YBX3P16989 HM13-210ENST00000466766 358 ntTSL 215.59■□□□□ 0.093e-8■□□□□ 9.3
YBX3P16989 HM13-224ENST00000498035 3932 ntTSL 2 BASIC8.65□□□□□ -1.033e-8■□□□□ 9.3
YBX3P16989 CHP1-209ENST00000561280 572 ntTSL 416.17■□□□□ 0.186e-8■□□□□ 9.3
YBX3P16989 CHP1-207ENST00000560784 717 ntTSL 515.97■□□□□ 0.156e-8■□□□□ 9.3
YBX3P16989 CHP1-204ENST00000560397 568 ntTSL 3 BASIC14.5□□□□□ -0.096e-8■□□□□ 9.3
YBX3P16989 CHP1-206ENST00000560633 594 ntTSL 37.23□□□□□ -1.256e-8■□□□□ 9.3
YBX3P16989 CHP1-208ENST00000560965 467 ntTSL 26.93□□□□□ -1.36e-8■□□□□ 9.3
YBX3P16989 RBBP4-210ENST00000475321 619 ntTSL 55.4□□□□□ -1.541e-18■□□□□ 9.3
YBX3P16989 EMC1-212ENST00000494770 779 ntTSL 516.16■□□□□ 0.181e-6■□□□□ 9.3
YBX3P16989 EMC1-204ENST00000462505 524 ntTSL 45.24□□□□□ -1.571e-6■□□□□ 9.3
YBX3P16989 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.377e-7■□□□□ 9.3
YBX3P16989 SNRNP25-207ENST00000493672 329 ntTSL 515.99■□□□□ 0.159e-7■□□□□ 9.3
YBX3P16989 SNRNP25-204ENST00000417493 408 ntTSL 514.24□□□□□ -0.139e-7■□□□□ 9.3
YBX3P16989 NUP93-208ENST00000563858 797 ntTSL 522.44■■□□□ 1.183e-8■□□□□ 9.3
YBX3P16989 NUP93-221ENST00000569863 630 ntTSL 422.01■■□□□ 1.113e-8■□□□□ 9.3
YBX3P16989 NUP93-215ENST00000567641 604 ntTSL 410.17□□□□□ -0.783e-8■□□□□ 9.3
YBX3P16989 SLU7-201ENST00000297151 3793 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.821e-6■□□□□ 9.3
YBX3P16989 NUP93-213ENST00000566727 563 ntTSL 49.16□□□□□ -0.943e-8■□□□□ 9.3
YBX3P16989 SLU7-205ENST00000520841 680 ntTSL 27.56□□□□□ -1.21e-6■□□□□ 9.3
YBX3P16989 SLU7-209ENST00000523219 600 ntTSL 24.93□□□□□ -1.621e-6■□□□□ 9.3
YBX3P16989 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC18.62■□□□□ 0.572e-6■□□□□ 9.3
YBX3P16989 RPS6KB2-206ENST00000525726 497 ntTSL 315.13■□□□□ 0.012e-7■□□□□ 9.3
YBX3P16989 PTOV1-211ENST00000598632 1073 ntTSL 228.1■■■□□ 2.092e-19■□□□□ 9.3
YBX3P16989 PTOV1-217ENST00000601501 564 ntTSL 220.88■□□□□ 0.932e-19■□□□□ 9.3
YBX3P16989 PTOV1-202ENST00000594151 995 ntTSL 519.3■□□□□ 0.682e-19■□□□□ 9.3
YBX3P16989 PTOV1-221ENST00000602040 597 ntTSL 217.61■□□□□ 0.412e-19■□□□□ 9.3
YBX3P16989 PTOV1-215ENST00000600793 426 ntTSL 516.64■□□□□ 0.252e-19■□□□□ 9.3
YBX3P16989 PTOV1-204ENST00000594640 490 ntTSL 316.3■□□□□ 0.22e-19■□□□□ 9.3
YBX3P16989 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.21■□□□□ 0.512e-6■□□□□ 9.3
YBX3P16989 NUP214-215ENST00000525980 2274 ntTSL 29.34□□□□□ -0.919e-13■□□□□ 9.3
YBX3P16989 STRADB-204ENST00000447698 576 ntTSL 430.59■■■□□ 2.494e-9■□□□□ 9.3
YBX3P16989 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.714e-7■□□□□ 9.3
YBX3P16989 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.615e-6■□□□□ 9.3
YBX3P16989 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.514e-9■□□□□ 9.3
YBX3P16989 CHCHD6-205ENST00000510044 670 ntTSL 223.08■■□□□ 1.295e-6■□□□□ 9.3
YBX3P16989 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC22.38■■□□□ 1.173e-8■□□□□ 9.3
YBX3P16989 CHCHD6-203ENST00000504973 562 ntTSL 321.84■■□□□ 1.095e-6■□□□□ 9.3
YBX3P16989 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.984e-9■□□□□ 9.3
YBX3P16989 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.72■□□□□ 0.914e-9■□□□□ 9.3
YBX3P16989 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.863e-8■□□□□ 9.3
YBX3P16989 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.11■□□□□ 0.814e-9■□□□□ 9.3
YBX3P16989 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.751e-6■□□□□ 9.3
YBX3P16989 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC19.32■□□□□ 0.684e-9■□□□□ 9.3
YBX3P16989 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.63■□□□□ 0.574e-7■□□□□ 9.3
YBX3P16989 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.37■□□□□ 0.534e-7■□□□□ 9.3
YBX3P16989 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC18.13■□□□□ 0.494e-7■□□□□ 9.3
Retrieved 100 of 29,075 protein–RNA pairs in 124.6 ms