Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
USP28Q96RU2 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 CICP16-201ENST00000502609 2813 ntBASIC17.09■□□□□ 0.33
USP28Q96RU2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
USP28Q96RU2 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 MIR770-201ENST00000390219 98 ntBASIC17.09■□□□□ 0.33
USP28Q96RU2 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.09■□□□□ 0.33
USP28Q96RU2 FO681548.1-201ENST00000455617 1132 ntBASIC17.09■□□□□ 0.33
USP28Q96RU2 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.09■□□□□ 0.33
USP28Q96RU2 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.09■□□□□ 0.33
USP28Q96RU2 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.09■□□□□ 0.33
USP28Q96RU2 AC008494.3-201ENST00000606615 944 ntBASIC17.09■□□□□ 0.33
USP28Q96RU2 WFDC1-204ENST00000613603 549 ntBASIC17.09■□□□□ 0.33
USP28Q96RU2 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.09■□□□□ 0.33
USP28Q96RU2 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.09■□□□□ 0.33
USP28Q96RU2 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USP28Q96RU2 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP28Q96RU2 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC17.08■□□□□ 0.33
USP28Q96RU2 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
USP28Q96RU2 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
USP28Q96RU2 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
USP28Q96RU2 AC010327.5-201ENST00000586923 3061 ntBASIC17.08■□□□□ 0.33
USP28Q96RU2 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC17.08■□□□□ 0.33
USP28Q96RU2 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.08■□□□□ 0.33
USP28Q96RU2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 MYADML-201ENST00000474610 2147 ntBASIC17.08■□□□□ 0.33
USP28Q96RU2 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP28Q96RU2 MSTO2P-201ENST00000314835 1709 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
USP28Q96RU2 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
USP28Q96RU2 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.08■□□□□ 0.32
USP28Q96RU2 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 AL136172.1-201ENST00000598590 1394 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 AL138725.1-201ENST00000407347 1314 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 RN7SKP230-201ENST00000365642 335 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 ACKR1-201ENST00000368121 1240 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 TLE1P1-201ENST00000422965 589 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.08■□□□□ 0.32
USP28Q96RU2 AC093433.1-201ENST00000458048 571 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.08■□□□□ 0.32
USP28Q96RU2 AC131206.1-201ENST00000538078 1211 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.08■□□□□ 0.32
USP28Q96RU2 AC027796.2-201ENST00000575326 344 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.08■□□□□ 0.32
USP28Q96RU2 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 AC004233.3-201ENST00000607794 1269 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC17.08■□□□□ 0.32
USP28Q96RU2 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
USP28Q96RU2 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP28Q96RU2 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC17.08■□□□□ 0.32
USP28Q96RU2 AC011474.4-201ENST00000623523 2076 ntBASIC17.08■□□□□ 0.32
USP28Q96RU2 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms