Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC20.73■□□□□ 0.91
USP47Q96K76 HNRNPA1P63-201ENST00000427917 963 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 AL157407.1-201ENST00000435784 904 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 POM121L10P-201ENST00000436994 1285 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 SKA2-202ENST00000437036 625 ntTSL 2 BASIC20.73■□□□□ 0.91
USP47Q96K76 HNRNPA1P36-201ENST00000521313 955 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC20.73■□□□□ 0.91
USP47Q96K76 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 MIR6720-201ENST00000611664 98 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 AC022748.3-201ENST00000621828 275 ntBASIC20.73■□□□□ 0.91
USP47Q96K76 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
USP47Q96K76 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.73■□□□□ 0.91
USP47Q96K76 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP47Q96K76 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP47Q96K76 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
USP47Q96K76 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USP47Q96K76 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP47Q96K76 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP47Q96K76 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP47Q96K76 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
USP47Q96K76 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC20.72■□□□□ 0.91
USP47Q96K76 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 AC027601.3-201ENST00000622907 509 ntBASIC20.72■□□□□ 0.91
USP47Q96K76 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 MYADML-201ENST00000474610 2147 ntBASIC20.72■□□□□ 0.91
USP47Q96K76 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC20.72■□□□□ 0.91
USP47Q96K76 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 KRTAP10-13P-201ENST00000412914 571 ntBASIC20.72■□□□□ 0.91
USP47Q96K76 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 AC104306.2-201ENST00000451877 341 ntBASIC20.72■□□□□ 0.91
USP47Q96K76 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.72■□□□□ 0.91
USP47Q96K76 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP47Q96K76 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.72■□□□□ 0.91
USP47Q96K76 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP47Q96K76 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 GRN-222ENST00000639447 1314 ntTSL 2 BASIC20.71■□□□□ 0.91
USP47Q96K76 AMT-239ENST00000636865 1914 ntTSL 5 BASIC20.71■□□□□ 0.91
USP47Q96K76 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP47Q96K76 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms