Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.75□□□□□ -0.05
PKNOX1P55347 HLA-K-203ENST00000430151 1046 ntBASIC14.75□□□□□ -0.05
PKNOX1P55347 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
PKNOX1P55347 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.75□□□□□ -0.05
PKNOX1P55347 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.75□□□□□ -0.05
PKNOX1P55347 AC026410.3-201ENST00000514280 936 ntBASIC14.75□□□□□ -0.05
PKNOX1P55347 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.75□□□□□ -0.05
PKNOX1P55347 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.75□□□□□ -0.05
PKNOX1P55347 RARRES2P5-201ENST00000564013 466 ntBASIC14.75□□□□□ -0.05
PKNOX1P55347 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
PKNOX1P55347 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
PKNOX1P55347 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PKNOX1P55347 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.75□□□□□ -0.05
PKNOX1P55347 CICP20-201ENST00000443330 2801 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 AL138799.1-201ENST00000448213 1675 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
PKNOX1P55347 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
PKNOX1P55347 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 AL158070.2-201ENST00000623713 1621 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AC087386.2-201ENST00000623212 4637 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AL589987.1-201ENST00000453380 819 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 FAM86LP-201ENST00000478302 853 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 AC135586.1-201ENST00000539323 574 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.74□□□□□ -0.05
PKNOX1P55347 AC107373.2-201ENST00000607735 490 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
PKNOX1P55347 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
PKNOX1P55347 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
PKNOX1P55347 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
PKNOX1P55347 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
PKNOX1P55347 AC015802.1-201ENST00000588104 1449 ntBASIC14.74□□□□□ -0.05
PKNOX1P55347 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.74□□□□□ -0.05
PKNOX1P55347 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms