Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 KLK8-205ENST00000593490 267 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXA1P49639 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 AC120114.3-201ENST00000611923 658 ntBASIC12.53□□□□□ -0.4
HOXA1P49639 FAM197Y3-203ENST00000618346 717 ntBASIC12.53□□□□□ -0.4
HOXA1P49639 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 FP325330.2-201ENST00000624219 5630 ntBASIC12.53□□□□□ -0.4
HOXA1P49639 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 PI4KAP2-211ENST00000486209 3213 ntTSL 5 BASIC12.52□□□□□ -0.4
HOXA1P49639 AC114271.1-201ENST00000612689 2813 ntBASIC12.52□□□□□ -0.4
HOXA1P49639 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
HOXA1P49639 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
HOXA1P49639 AP3S2-216ENST00000617003 1561 ntBASIC12.52□□□□□ -0.4
HOXA1P49639 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.52□□□□□ -0.4
HOXA1P49639 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
HOXA1P49639 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
HOXA1P49639 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA1P49639 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
HOXA1P49639 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.52□□□□□ -0.41
HOXA1P49639 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 MIR346-201ENST00000362234 95 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 YBX2P1-201ENST00000394192 760 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 AC023274.1-201ENST00000418278 595 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA1P49639 FAM8A3P-201ENST00000427218 844 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.52□□□□□ -0.41
HOXA1P49639 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA1P49639 KRT8P48-201ENST00000515599 1220 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 SLC25A39P2-201ENST00000537614 270 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 CBFB-203ENST00000561924 584 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 RARRES2P9-201ENST00000565168 469 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 AC106730.1-201ENST00000566722 1090 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA1P49639 CITED2-204ENST00000618718 901 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA1P49639 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA1P49639 AL357140.3-201ENST00000639753 1983 ntBASIC12.52□□□□□ -0.41
HOXA1P49639 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
HOXA1P49639 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA1P49639 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms