Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC13.07□□□□□ -0.32
COL8A1P27658 MIR4522-201ENST00000584932 87 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 AC018695.6-201ENST00000614011 534 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
COL8A1P27658 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 AL583805.1-201ENST00000391389 531 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.06□□□□□ -0.32
COL8A1P27658 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC13.06□□□□□ -0.32
COL8A1P27658 AC024293.1-201ENST00000467930 498 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 SCARNA21-201ENST00000517026 139 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 MIR4313-201ENST00000580760 101 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 MIR3180-2-201ENST00000581748 88 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC13.06□□□□□ -0.32
COL8A1P27658 AC105137.3-201ENST00000617588 984 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL8A1P27658 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 AC002472.3-201ENST00000640124 621 ntBASIC13.06□□□□□ -0.32
COL8A1P27658 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.06□□□□□ -0.32
COL8A1P27658 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
COL8A1P27658 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
COL8A1P27658 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL8A1P27658 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 AC136759.1-202ENST00000530858 2194 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.05□□□□□ -0.32
COL8A1P27658 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 KRT8P21-201ENST00000430398 1491 ntBASIC13.05□□□□□ -0.32
COL8A1P27658 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.05□□□□□ -0.32
COL8A1P27658 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL8A1P27658 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms