Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 AL354702.1-201ENST00000442006 1960 ntBASIC16.7■□□□□ 0.26
MSH4O15457 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH4O15457 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 AC132192.2-201ENST00000596206 1147 ntBASIC16.7■□□□□ 0.26
MSH4O15457 AL118558.3-201ENST00000607414 1079 ntBASIC16.7■□□□□ 0.26
MSH4O15457 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH4O15457 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 AL008638.5-201ENST00000623814 1298 ntBASIC16.7■□□□□ 0.26
MSH4O15457 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH4O15457 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH4O15457 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH4O15457 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
MSH4O15457 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH4O15457 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 AL590440.2-201ENST00000641973 1595 ntBASIC16.69■□□□□ 0.26
MSH4O15457 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.69■□□□□ 0.26
MSH4O15457 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.69■□□□□ 0.26
MSH4O15457 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 POM121L10P-201ENST00000436994 1285 ntBASIC16.69■□□□□ 0.26
MSH4O15457 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.69■□□□□ 0.26
MSH4O15457 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.69■□□□□ 0.26
MSH4O15457 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.69■□□□□ 0.26
MSH4O15457 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 AC027601.3-201ENST00000622907 509 ntBASIC16.69■□□□□ 0.26
MSH4O15457 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
MSH4O15457 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
MSH4O15457 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 LINC02228-204ENST00000642115 2962 ntBASIC16.69■□□□□ 0.26
MSH4O15457 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH4O15457 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
MSH4O15457 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH4O15457 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MSH4O15457 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH4O15457 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.68■□□□□ 0.26
MSH4O15457 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.68■□□□□ 0.26
MSH4O15457 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms