Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.12□□□□□ -0.47
HMGB3O15347 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.12□□□□□ -0.47
HMGB3O15347 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 AC140658.5-201ENST00000438532 169 ntBASIC12.12□□□□□ -0.47
HMGB3O15347 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC12.12□□□□□ -0.47
HMGB3O15347 RNA5SP410-201ENST00000516285 106 ntBASIC12.12□□□□□ -0.47
HMGB3O15347 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.12□□□□□ -0.47
HMGB3O15347 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.12□□□□□ -0.47
HMGB3O15347 LINC01711-201ENST00000598340 967 ntBASIC12.12□□□□□ -0.47
HMGB3O15347 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.12□□□□□ -0.47
HMGB3O15347 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
HMGB3O15347 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 LINC01544-201ENST00000567801 5168 ntTSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 NAV2-201ENST00000349880 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
HMGB3O15347 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PTCH1-207ENST00000429896 6563 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
HMGB3O15347 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.11□□□□□ -0.47
HMGB3O15347 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.11□□□□□ -0.47
HMGB3O15347 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 SLC44A1-201ENST00000374720 10511 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HMGB3O15347 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 VN2R19P-201ENST00000442399 1052 ntBASIC12.11□□□□□ -0.47
HMGB3O15347 AC092910.1-201ENST00000482027 1129 ntBASIC12.11□□□□□ -0.47
HMGB3O15347 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC12.11□□□□□ -0.47
HMGB3O15347 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC12.11□□□□□ -0.47
HMGB3O15347 PRELID1P1-202ENST00000567272 903 ntBASIC12.11□□□□□ -0.47
HMGB3O15347 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC12.11□□□□□ -0.47
HMGB3O15347 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 AC019294.4-201ENST00000561777 2905 ntBASIC12.11□□□□□ -0.47
HMGB3O15347 PNPLA7-201ENST00000277531 4581 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.11□□□□□ -0.47
HMGB3O15347 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HMGB3O15347 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HMGB3O15347 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
HMGB3O15347 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HMGB3O15347 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HMGB3O15347 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms