Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC66A2RUB6 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 MIR1233-2-201ENST00000408138 82 ntBASIC16.34■□□□□ 0.21
CCDC66A2RUB6 MIR1233-1-201ENST00000408722 82 ntBASIC16.34■□□□□ 0.21
CCDC66A2RUB6 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 UPF3AP3-201ENST00000420996 769 ntBASIC16.34■□□□□ 0.21
CCDC66A2RUB6 GHSR-202ENST00000427970 912 ntBASIC16.34■□□□□ 0.21
CCDC66A2RUB6 SPDYE14P-201ENST00000442619 822 ntBASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AC011467.4-201ENST00000594891 528 ntBASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC66A2RUB6 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 HADH-202ENST00000403312 1752 ntTSL 5 BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 AC019294.4-201ENST00000561777 2905 ntBASIC16.33■□□□□ 0.21
CCDC66A2RUB6 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC66A2RUB6 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 RPSAP43-201ENST00000402237 625 ntBASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AP000344.2-201ENST00000512987 629 ntBASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AC026150.2-201ENST00000564693 1156 ntBASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC66A2RUB6 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms