Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLCF1Q9UBD9 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLCF1Q9UBD9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLCF1Q9UBD9 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLCF1Q9UBD9 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLCF1Q9UBD9 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLCF1Q9UBD9 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 AC010141.1-201ENST00000411585 623 ntBASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLCF1Q9UBD9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ALG3P1-201ENST00000508806 1114 ntBASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 SHC1P1-201ENST00000425230 1745 ntBASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 SALL4P5-201ENST00000419001 1760 ntBASIC13.29□□□□□ -0.28
CLCF1Q9UBD9 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms