Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC119751.2-201ENST00000504529 210 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC078819.1-201ENST00000547454 765 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC012085.1-201ENST00000548270 765 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AL359881.2-201ENST00000602973 570 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 ENPP7P14-201ENST00000621765 1040 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 COX11-210ENST00000639671 696 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AP005482.1-201ENST00000563722 1273 ntBASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AC004466.1-201ENST00000599515 1080 ntBASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HCN3Q9P1Z3 AGAP7P-201ENST00000582299 2062 ntBASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 AGAP14-201ENST00000624701 2060 ntBASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
HCN3Q9P1Z3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms