Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 AC087392.5-201ENST00000612517 489 ntBASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 CMC2-224ENST00000630396 481 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC87Q9NVE4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 Z69890.1-201ENST00000382990 339 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 AC010234.1-201ENST00000494599 870 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 AC084781.1-201ENST00000613737 656 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 AC025262.2-201ENST00000623975 1056 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 LINC01101-201ENST00000622953 1884 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 AC136621.1-201ENST00000624017 2304 ntBASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC87Q9NVE4 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 MRPL22P1-201ENST00000505398 616 ntBASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 AL022334.2-201ENST00000610000 484 ntBASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 TMBIM7P-203ENST00000641617 1718 ntBASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 AL136172.1-201ENST00000598590 1394 ntBASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 AC009093.10-201ENST00000641956 1442 ntBASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC87Q9NVE4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
CCDC87Q9NVE4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
CCDC87Q9NVE4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC18.64■□□□□ 0.58
CCDC87Q9NVE4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 DUX4L50-201ENST00000455245 715 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms