Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC005740.1-201ENST00000515639 522 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC140658.4-201ENST00000561990 352 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC021016.3-201ENST00000608367 477 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 HMGB1P24-201ENST00000611897 328 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 LINC00265-2P-201ENST00000413372 782 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AC025186.1-201ENST00000478174 870 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 RN7SL23P-201ENST00000484055 275 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 RNA5SP406-201ENST00000516106 112 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 IGHEP1-201ENST00000521393 651 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 SORD2P-201ENST00000558556 1069 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 KRT8P43-201ENST00000406052 1458 ntBASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK3Q9BYB0 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
SHANK3Q9BYB0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SHANK3Q9BYB0 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 RN7SL788P-201ENST00000460504 316 ntBASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 LINC00244-201ENST00000625073 613 ntBASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 AC064801.2-201ENST00000625052 1303 ntBASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK3Q9BYB0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 NME4-203ENST00000397722 1232 ntTSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 ACTG1P19-201ENST00000418987 1116 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AC026470.1-201ENST00000478038 846 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AC226150.1-201ENST00000544259 466 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AC055811.3-201ENST00000584952 686 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AP005264.6-204ENST00000588436 719 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AL021707.6-201ENST00000609212 491 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 AC106827.1-201ENST00000366454 431 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 GEMIN8P4-201ENST00000380526 729 ntBASIC18.69■□□□□ 0.58
SHANK3Q9BYB0 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms