Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SNX1-214ENST00000625244 324 ntTSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 STRCP1-201ENST00000509801 5328 ntBASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 GNAQP1-201ENST00000444815 1067 ntBASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 AGER-214ENST00000538695 487 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 INTS4P1-203ENST00000641008 3683 ntBASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PDLIM3Q53GG5 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms