Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC018629.1-201ENST00000623381 1736 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 WASH3P-207ENST00000560956 1394 ntBASIC17.12■□□□□ 0.33
HMGCS2P54868 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGCS2P54868 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HMGCS2P54868 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGCS2P54868 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGCS2P54868 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.11■□□□□ 0.33
HMGCS2P54868 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 AC135983.4-201ENST00000564116 1262 ntBASIC17.11■□□□□ 0.33
HMGCS2P54868 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 LINC01783-202ENST00000614408 828 ntBASIC17.11■□□□□ 0.33
HMGCS2P54868 BX284668.2-205ENST00000619677 828 ntBASIC17.11■□□□□ 0.33
HMGCS2P54868 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
HMGCS2P54868 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGCS2P54868 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGCS2P54868 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGCS2P54868 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HMGCS2P54868 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 RPS9P1-201ENST00000419943 583 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 XBP1P1-201ENST00000436573 652 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGCS2P54868 RN7SL8P-201ENST00000461771 266 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGCS2P54868 FOS-204ENST00000554617 796 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGCS2P54868 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 PHBP15-201ENST00000574228 665 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
HMGCS2P54868 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGCS2P54868 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGCS2P54868 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGCS2P54868 MIR6842-201ENST00000612539 65 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 AC242376.2-201ENST00000619355 883 ntBASIC17.1■□□□□ 0.33
HMGCS2P54868 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGCS2P54868 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGCS2P54868 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGCS2P54868 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGCS2P54868 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms