Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 MEGF8-203ENST00000378073 11034 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 PDE5A-202ENST00000354960 7154 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 ATP8A1-202ENST00000381668 8270 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HMGB3O15347 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.13□□□□□ -0.47
HMGB3O15347 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 RPL5P21-201ENST00000404620 815 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 AC098859.1-201ENST00000502915 1238 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.13□□□□□ -0.47
HMGB3O15347 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 AL138918.1-201ENST00000568306 659 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC12.13□□□□□ -0.47
HMGB3O15347 AC097359.3-201ENST00000603982 1210 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 SPTSSB-204ENST00000617024 1292 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 AC010507.1-201ENST00000633895 436 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 BOC-215ENST00000495514 4646 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 AL359881.3-201ENST00000602640 1721 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 KDM5D-202ENST00000382806 5134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HMGB3O15347 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.13□□□□□ -0.47
HMGB3O15347 CYP4F24P-201ENST00000586049 1580 ntBASIC12.13□□□□□ -0.47
HMGB3O15347 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 FAM46A-202ENST00000369754 5664 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HMGB3O15347 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 CEP78-205ENST00000424347 11198 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 CDH4-203ENST00000614565 6513 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
HMGB3O15347 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HMGB3O15347 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 KCNH1-209ENST00000639952 8075 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
HMGB3O15347 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HMGB3O15347 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.12□□□□□ -0.47
HMGB3O15347 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.12□□□□□ -0.47
HMGB3O15347 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.12□□□□□ -0.47
HMGB3O15347 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms