Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
UPK1AO00322 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
UPK1AO00322 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.22□□□□□ -0.13
UPK1AO00322 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
UPK1AO00322 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
UPK1AO00322 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.22□□□□□ -0.13
UPK1AO00322 HMGN1P19-201ENST00000436976 333 ntBASIC14.22□□□□□ -0.13
UPK1AO00322 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 AP001582.1-201ENST00000525856 295 ntBASIC14.22□□□□□ -0.13
UPK1AO00322 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.22□□□□□ -0.13
UPK1AO00322 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
UPK1AO00322 AC140912.1-201ENST00000577171 1054 ntBASIC14.22□□□□□ -0.13
UPK1AO00322 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.22□□□□□ -0.13
UPK1AO00322 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.22□□□□□ -0.13
UPK1AO00322 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
UPK1AO00322 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.22□□□□□ -0.13
UPK1AO00322 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
UPK1AO00322 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
UPK1AO00322 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.22□□□□□ -0.13
UPK1AO00322 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
UPK1AO00322 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
UPK1AO00322 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
UPK1AO00322 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
UPK1AO00322 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.21□□□□□ -0.13
UPK1AO00322 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.21□□□□□ -0.13
UPK1AO00322 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.21□□□□□ -0.13
UPK1AO00322 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 WASH4P-201ENST00000564273 1246 ntBASIC14.21□□□□□ -0.13
UPK1AO00322 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.21□□□□□ -0.13
UPK1AO00322 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.21□□□□□ -0.13
UPK1AO00322 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.21□□□□□ -0.13
UPK1AO00322 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 AL354702.1-201ENST00000442006 1960 ntBASIC14.21□□□□□ -0.13
UPK1AO00322 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
UPK1AO00322 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
UPK1AO00322 CICP20-201ENST00000443330 2801 ntBASIC14.21□□□□□ -0.14
UPK1AO00322 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
UPK1AO00322 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
UPK1AO00322 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.21□□□□□ -0.14
UPK1AO00322 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
UPK1AO00322 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
UPK1AO00322 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
UPK1AO00322 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
UPK1AO00322 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
UPK1AO00322 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms