Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC152010.1-201ENST00000415779 2006 ntBASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 AL117339.1-201ENST00000419779 428 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 COX20P2-201ENST00000452636 358 ntBASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 AC006480.2-201ENST00000609770 1337 ntBASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
DEPDC4Q8N2C3 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 HLA-V-204ENST00000476601 1289 ntBASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 EMC4-208ENST00000559078 599 ntTSL 3 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AL589739.1-201ENST00000607720 493 ntBASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AC138969.3-201ENST00000546612 1459 ntBASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AC138932.2-201ENST00000548268 1459 ntBASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 AC126755.4-201ENST00000549796 1459 ntBASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
DEPDC4Q8N2C3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms