Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SERBP1P2-201ENST00000436888 1164 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 AC018638.5-201ENST00000450885 754 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 MIR6816-201ENST00000620368 66 ntBASIC12.13□□□□□ -0.47
VPS13CQ709C8 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13CQ709C8 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
VPS13CQ709C8 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 SURF4-203ENST00000371991 715 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 CYP2T1P-202ENST00000641596 2535 ntBASIC12.12□□□□□ -0.47
VPS13CQ709C8 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 HMGB1P24-201ENST00000611897 328 ntBASIC12.12□□□□□ -0.47
VPS13CQ709C8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 BRD7P5-201ENST00000299197 1822 ntBASIC12.12□□□□□ -0.47
VPS13CQ709C8 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 GDNF-207ENST00000515058 764 ntTSL 5 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13CQ709C8 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13CQ709C8 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 ACTG1P19-201ENST00000418987 1116 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 TLE1P1-201ENST00000422965 589 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 ABHD17AP9-201ENST00000561925 548 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 AC114947.1-202ENST00000514136 344 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 USB1-205ENST00000561743 1135 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13CQ709C8 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13CQ709C8 FAM90A21P-201ENST00000510875 1396 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 FAM90A15P-201ENST00000514465 1395 ntBASIC12.11□□□□□ -0.47
VPS13CQ709C8 FAM90A6P-201ENST00000515148 1394 ntBASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms