Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 ACTBP8-201ENST00000403258 1108 ntBASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 HOMER2P2-201ENST00000451621 847 ntBASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 AC005695.3-201ENST00000614522 232 ntBASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 AL008638.5-201ENST00000623814 1298 ntBASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC144BQ3MJ40 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CD8B2-202ENST00000417670 633 ntBASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AC114812.1-204ENST00000449669 728 ntBASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 ECM1P1-201ENST00000604092 1279 ntBASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AC025181.2-201ENST00000606994 802 ntBASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC144BQ3MJ40 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms