Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 FAM45BP-202ENST00000592932 1624 ntBASIC13.46□□□□□ -0.25
CLRN1P58418 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.46□□□□□ -0.25
CLRN1P58418 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CLRN1P58418 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CLRN1P58418 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
CLRN1P58418 KLF2P2-201ENST00000416807 1039 ntBASIC13.46□□□□□ -0.25
CLRN1P58418 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.46□□□□□ -0.25
CLRN1P58418 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.46□□□□□ -0.25
CLRN1P58418 WASH4P-201ENST00000564273 1246 ntBASIC13.46□□□□□ -0.25
CLRN1P58418 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CLRN1P58418 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.46□□□□□ -0.25
CLRN1P58418 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.46□□□□□ -0.25
CLRN1P58418 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.46□□□□□ -0.25
CLRN1P58418 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CLRN1P58418 WFDC1-204ENST00000613603 549 ntBASIC13.46□□□□□ -0.25
CLRN1P58418 AP005019.2-201ENST00000615104 511 ntBASIC13.46□□□□□ -0.25
CLRN1P58418 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.46□□□□□ -0.25
CLRN1P58418 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLRN1P58418 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.46□□□□□ -0.25
CLRN1P58418 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.46□□□□□ -0.25
CLRN1P58418 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
CLRN1P58418 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.46□□□□□ -0.26
CLRN1P58418 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
CLRN1P58418 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.46□□□□□ -0.26
CLRN1P58418 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CLRN1P58418 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.45□□□□□ -0.26
CLRN1P58418 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
CLRN1P58418 AP001063.1-201ENST00000568332 529 ntBASIC13.45□□□□□ -0.26
CLRN1P58418 TP53TG3HP-202ENST00000569755 579 ntBASIC13.45□□□□□ -0.26
CLRN1P58418 AC092364.2-202ENST00000597012 1073 ntBASIC13.45□□□□□ -0.26
CLRN1P58418 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.45□□□□□ -0.26
CLRN1P58418 AC005252.2-201ENST00000624630 1141 ntBASIC13.45□□□□□ -0.26
CLRN1P58418 AL033527.5-201ENST00000641382 801 ntBASIC13.45□□□□□ -0.26
CLRN1P58418 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 AL513477.1-201ENST00000602865 2407 ntBASIC13.45□□□□□ -0.26
CLRN1P58418 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
CLRN1P58418 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CLRN1P58418 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CLRN1P58418 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.45□□□□□ -0.26
CLRN1P58418 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CLRN1P58418 AC055811.4-201ENST00000624039 1754 ntBASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms