Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 AC020658.7-201ENST00000624274 2442 ntBASIC17.61■□□□□ 0.41
MRE11P49959 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.61■□□□□ 0.41
MRE11P49959 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC17.61■□□□□ 0.41
MRE11P49959 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
MRE11P49959 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.61■□□□□ 0.41
MRE11P49959 IGHV3-65-201ENST00000523210 341 ntBASIC17.61■□□□□ 0.41
MRE11P49959 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
MRE11P49959 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.61■□□□□ 0.41
MRE11P49959 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
MRE11P49959 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 SERBP1P5-201ENST00000510079 1181 ntBASIC17.6■□□□□ 0.41
MRE11P49959 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.6■□□□□ 0.41
MRE11P49959 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.6■□□□□ 0.41
MRE11P49959 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 AL450472.2-201ENST00000603663 1156 ntBASIC17.6■□□□□ 0.41
MRE11P49959 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.6■□□□□ 0.41
MRE11P49959 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.6■□□□□ 0.41
MRE11P49959 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
MRE11P49959 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.6■□□□□ 0.41
MRE11P49959 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.59■□□□□ 0.41
MRE11P49959 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 AC084364.1-201ENST00000551967 1556 ntBASIC17.59■□□□□ 0.41
MRE11P49959 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.59■□□□□ 0.41
MRE11P49959 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.59■□□□□ 0.41
MRE11P49959 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 AC125807.1-201ENST00000483097 614 ntBASIC17.59■□□□□ 0.41
MRE11P49959 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.59■□□□□ 0.41
MRE11P49959 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.59■□□□□ 0.41
MRE11P49959 AC008667.4-201ENST00000607370 168 ntBASIC17.59■□□□□ 0.41
MRE11P49959 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.59■□□□□ 0.41
MRE11P49959 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC17.59■□□□□ 0.41
MRE11P49959 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
MRE11P49959 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms