Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC19.11■□□□□ 0.65
COL18A1P39060 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL18A1P39060 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 NME4-203ENST00000397722 1232 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC19.11■□□□□ 0.65
COL18A1P39060 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 AGPAT5P1-201ENST00000455855 1019 ntBASIC19.11■□□□□ 0.65
COL18A1P39060 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC19.11■□□□□ 0.65
COL18A1P39060 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC19.11■□□□□ 0.65
COL18A1P39060 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL18A1P39060 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 AC021305.1-201ENST00000520656 1514 ntBASIC19.1■□□□□ 0.65
COL18A1P39060 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
COL18A1P39060 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
COL18A1P39060 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
COL18A1P39060 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 RPL3P2-204ENST00000413027 1203 ntBASIC19.1■□□□□ 0.65
COL18A1P39060 ACTG1P19-201ENST00000418987 1116 ntBASIC19.1■□□□□ 0.65
COL18A1P39060 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC19.1■□□□□ 0.65
COL18A1P39060 AL021707.6-201ENST00000609212 491 ntBASIC19.1■□□□□ 0.65
COL18A1P39060 RNF146-211ENST00000609447 607 ntTSL 4 BASIC19.1■□□□□ 0.65
COL18A1P39060 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC19.1■□□□□ 0.65
COL18A1P39060 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.1■□□□□ 0.65
COL18A1P39060 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
COL18A1P39060 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
COL18A1P39060 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC19.1■□□□□ 0.65
COL18A1P39060 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COL18A1P39060 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL18A1P39060 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC19.09■□□□□ 0.65
COL18A1P39060 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 CCT8L1P-201ENST00000465400 1674 ntBASIC19.09■□□□□ 0.65
COL18A1P39060 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 AC026470.1-201ENST00000478038 846 ntBASIC19.09■□□□□ 0.65
COL18A1P39060 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
COL18A1P39060 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 SORD2P-201ENST00000558556 1069 ntBASIC19.09■□□□□ 0.65
COL18A1P39060 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 HMGB1P24-201ENST00000611897 328 ntBASIC19.09■□□□□ 0.65
COL18A1P39060 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC19.09■□□□□ 0.65
COL18A1P39060 AC117503.4-201ENST00000623229 1418 ntBASIC19.09■□□□□ 0.65
COL18A1P39060 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL18A1P39060 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC19.09■□□□□ 0.65
COL18A1P39060 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
COL18A1P39060 TREHP1-201ENST00000531328 465 ntBASIC19.09■□□□□ 0.65
COL18A1P39060 MAX-218ENST00000557746 571 ntTSL 4 BASIC19.09■□□□□ 0.65
COL18A1P39060 CMC2-204ENST00000562713 573 ntTSL 3 BASIC19.09■□□□□ 0.65
COL18A1P39060 CMC2-209ENST00000565108 399 ntTSL 2 BASIC19.09■□□□□ 0.65
COL18A1P39060 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL18A1P39060 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms