Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 AC067750.1-201ENST00000608826 6545 ntBASIC14.99□□□□□ -0.01
MSH3P20585 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.99□□□□□ -0.01
MSH3P20585 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSH3P20585 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.99□□□□□ -0.01
MSH3P20585 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 AC232323.1-201ENST00000540724 2099 ntBASIC14.98□□□□□ -0.01
MSH3P20585 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 AC092933.1-201ENST00000393644 945 ntBASIC14.98□□□□□ -0.01
MSH3P20585 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.98□□□□□ -0.01
MSH3P20585 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 DUX4L47-201ENST00000566374 394 ntBASIC14.98□□□□□ -0.01
MSH3P20585 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.98□□□□□ -0.01
MSH3P20585 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.98□□□□□ -0.01
MSH3P20585 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
MSH3P20585 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSH3P20585 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
MSH3P20585 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
MSH3P20585 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.97□□□□□ -0.01
MSH3P20585 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.97□□□□□ -0.01
MSH3P20585 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.97□□□□□ -0.01
MSH3P20585 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSH3P20585 AC016694.1-201ENST00000434179 700 ntBASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms