Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 UBA1-205ENST00000427561 671 ntTSL 518.9■□□□□ 0.622e-10■□□□□ 9.4
YBX3P16989 UBA1-207ENST00000451702 1706 ntTSL 513.99□□□□□ -0.172e-10■□□□□ 9.4
YBX3P16989 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.391e-7■□□□□ 9.4
YBX3P16989 IPO9-202ENST00000456707 609 ntTSL 312.47□□□□□ -0.414e-8■□□□□ 9.4
YBX3P16989 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.15■□□□□ 0.345e-10■□□□□ 9.4
YBX3P16989 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.065e-10■□□□□ 9.4
YBX3P16989 SARS-203ENST00000468588 1582 ntTSL 26.67□□□□□ -1.345e-10■□□□□ 9.4
YBX3P16989 CSNK1A1-208ENST00000523203 775 ntTSL 514.11□□□□□ -0.152e-8■□□□□ 9.4
YBX3P16989 CIZ1-213ENST00000471839 928 ntAPPRIS ALT2 TSL 214.67□□□□□ -0.066e-10■□□□□ 9.4
YBX3P16989 UFD1-206ENST00000466373 3059 ntTSL 210.75□□□□□ -0.692e-14■□□□□ 9.4
YBX3P16989 PRELID1-202ENST00000502670 587 ntTSL 329.25■■■□□ 2.271e-11■□□□□ 9.4
YBX3P16989 PRELID1-208ENST00000511309 778 ntTSL 229.25■■■□□ 2.271e-11■□□□□ 9.4
YBX3P16989 INSIG1-205ENST00000468307 852 ntTSL 57.57□□□□□ -1.28e-17■□□□□ 9.4
YBX3P16989 SLC7A8-211ENST00000528860 1499 ntTSL 219.51■□□□□ 0.714e-9■□□□□ 9.4
YBX3P16989 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.61■□□□□ 0.254e-9■□□□□ 9.4
YBX3P16989 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC15.33■□□□□ 0.044e-9■□□□□ 9.4
YBX3P16989 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.02■□□□□ -04e-9■□□□□ 9.4
YBX3P16989 SLC7A8-213ENST00000532568 572 ntTSL 48.33□□□□□ -1.084e-9■□□□□ 9.4
YBX3P16989 MSH2-203ENST00000454849 560 ntTSL 432.63■■■□□ 2.812e-6■□□□□ 9.4
YBX3P16989 SLC16A1-206ENST00000481750 430 ntTSL 28.83□□□□□ -12e-6■□□□□ 9.4
YBX3P16989 COPE-209ENST00000599964 542 ntTSL 423.52■■□□□ 1.361e-9■□□□□ 9.4
YBX3P16989 CMBL-202ENST00000503834 442 ntTSL 36.25□□□□□ -1.412e-6■□□□□ 9.4
YBX3P16989 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.631e-10■□□□□ 9.4
YBX3P16989 ATP6V1F-202ENST00000492758 711 ntTSL 2 BASIC15.02■□□□□ -01e-10■□□□□ 9.4
YBX3P16989 PPP2R5C-222ENST00000556570 477 ntTSL 59.08□□□□□ -0.962e-19■□□□□ 9.4
YBX3P16989 PPP2R5C-210ENST00000554137 384 ntTSL 55.11□□□□□ -1.592e-19■□□□□ 9.4
YBX3P16989 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.146e-8■□□□□ 9.4
YBX3P16989 C19orf24-203ENST00000485191 1675 ntTSL 223.49■■□□□ 1.356e-8■□□□□ 9.4
YBX3P16989 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.94■□□□□ 0.946e-8■□□□□ 9.4
YBX3P16989 C19orf24-204ENST00000585716 558 ntTSL 516.74■□□□□ 0.276e-8■□□□□ 9.4
YBX3P16989 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.722e-6■□□□□ 9.4
YBX3P16989 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.692e-6■□□□□ 9.4
YBX3P16989 BMP4-207ENST00000559501 1112 ntTSL 214.86□□□□□ -0.032e-6■□□□□ 9.4
YBX3P16989 BMP4-205ENST00000558984 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.052e-6■□□□□ 9.4
YBX3P16989 BMP4-202ENST00000417573 1784 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.32e-6■□□□□ 9.4
YBX3P16989 CS-217ENST00000550044 546 ntTSL 413.36□□□□□ -0.276e-10■□□□□ 9.4
YBX3P16989 ACTG1-203ENST00000571691 761 ntTSL 318.21■□□□□ 0.512e-29■□□□□ 9.4
YBX3P16989 POLD2-217ENST00000496539 571 ntTSL 222.52■■□□□ 1.23e-8■□□□□ 9.4
YBX3P16989 CCT4-202ENST00000461370 388 ntTSL 26.34□□□□□ -1.391e-15■□□□□ 9.4
YBX3P16989 RPS13-207ENST00000531008 594 ntTSL 26.97□□□□□ -1.293e-10■□□□□ 9.4
YBX3P16989 RPS13-208ENST00000531908 746 ntTSL 26.92□□□□□ -1.33e-10■□□□□ 9.4
YBX3P16989 STIP1-210ENST00000540887 877 ntTSL 219.7■□□□□ 0.742e-8■□□□□ 9.4
YBX3P16989 EIF3H-208ENST00000520813 562 ntTSL 420.81■□□□□ 0.923e-25■□□□□ 9.4
YBX3P16989 STX7-201ENST00000367937 1090 ntTSL 5 BASIC28.24■■■□□ 2.113e-7■□□□□ 9.4
YBX3P16989 C1QBP-204ENST00000573406 767 ntTSL 226.02■■□□□ 1.763e-7■□□□□ 9.4
YBX3P16989 OXA1L-204ENST00000431881 889 ntTSL 322.27■■□□□ 1.163e-7■□□□□ 9.4
YBX3P16989 STX7-203ENST00000448348 556 ntTSL 421.74■■□□□ 1.073e-7■□□□□ 9.4
YBX3P16989 KDM4B-210ENST00000592175 562 ntTSL 421.49■■□□□ 1.031e-10■□□□□ 9.4
YBX3P16989 GRN-204ENST00000586242 665 ntTSL 319.97■□□□□ 0.793e-7■□□□□ 9.4
YBX3P16989 OXA1L-205ENST00000442110 691 ntTSL 518.5■□□□□ 0.553e-7■□□□□ 9.4
YBX3P16989 PRPF8-202ENST00000571346 865 ntTSL 218.28■□□□□ 0.523e-7■□□□□ 9.4
YBX3P16989 TTC27-206ENST00000454690 500 ntTSL 317.41■□□□□ 0.383e-7■□□□□ 9.4
YBX3P16989 MON2-205ENST00000547095 5708 ntTSL 1 (best)17.13■□□□□ 0.333e-7■□□□□ 9.4
YBX3P16989 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.94■□□□□ 0.33e-7■□□□□ 9.4
YBX3P16989 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.243e-7■□□□□ 9.4
YBX3P16989 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.51■□□□□ 0.233e-7■□□□□ 9.4
YBX3P16989 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.46■□□□□ 0.231e-10■□□□□ 9.4
YBX3P16989 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.35■□□□□ 0.213e-7■□□□□ 9.4
YBX3P16989 MED28-203ENST00000503945 879 ntTSL 1 (best)16.34■□□□□ 0.213e-7■□□□□ 9.4
YBX3P16989 OXA1L-206ENST00000473744 824 ntTSL 316.33■□□□□ 0.23e-7■□□□□ 9.4
YBX3P16989 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.66■□□□□ 0.13e-7■□□□□ 9.4
YBX3P16989 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.54■□□□□ 0.083e-7■□□□□ 9.4
YBX3P16989 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.06■□□□□ 03e-7■□□□□ 9.4
YBX3P16989 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.083e-7■□□□□ 9.4
YBX3P16989 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.113e-7■□□□□ 9.4
YBX3P16989 GYG1-205ENST00000469873 704 ntTSL 214.25□□□□□ -0.133e-7■□□□□ 9.4
YBX3P16989 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.92□□□□□ -0.183e-7■□□□□ 9.4
YBX3P16989 SUCO-209ENST00000610051 2925 ntTSL 2 BASIC13.91□□□□□ -0.183e-7■□□□□ 9.4
YBX3P16989 KDM4B-208ENST00000589104 3470 ntTSL 213.87□□□□□ -0.191e-10■□□□□ 9.4
YBX3P16989 MON2-212ENST00000552115 3760 ntTSL 5 BASIC12.47□□□□□ -0.413e-7■□□□□ 9.4
YBX3P16989 HDAC3-211ENST00000491581 777 ntTSL 312.22□□□□□ -0.453e-7■□□□□ 9.4
YBX3P16989 DECR1-201ENST00000220764 1207 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.483e-7■□□□□ 9.4
YBX3P16989 SMYD3-212ENST00000483072 466 ntTSL 211.4□□□□□ -0.583e-7■□□□□ 9.4
YBX3P16989 TTC27-201ENST00000317907 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.613e-7■□□□□ 9.4
YBX3P16989 MXD1-205ENST00000465446 490 ntTSL 210.88□□□□□ -0.673e-7■□□□□ 9.4
YBX3P16989 KDM4B-207ENST00000588961 560 ntTSL 410.8□□□□□ -0.681e-10■□□□□ 9.4
YBX3P16989 MON2-214ENST00000641654 10382 ntBASIC10.68□□□□□ -0.73e-7■□□□□ 9.4
YBX3P16989 DECR1-210ENST00000520148 441 ntTSL 310.61□□□□□ -0.713e-7■□□□□ 9.4
YBX3P16989 SUCO-205ENST00000608566 756 ntTSL 28.95□□□□□ -0.983e-7■□□□□ 9.4
YBX3P16989 GYG1-208ENST00000479119 812 ntTSL 38.89□□□□□ -0.993e-7■□□□□ 9.4
YBX3P16989 TTC27-204ENST00000438654 297 ntTSL 38.23□□□□□ -1.093e-7■□□□□ 9.4
YBX3P16989 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.13e-7■□□□□ 9.4
YBX3P16989 SMYD3-211ENST00000482592 514 ntTSL 37.67□□□□□ -1.183e-7■□□□□ 9.4
YBX3P16989 DECR1-208ENST00000519328 816 ntTSL 1 (best)7.61□□□□□ -1.193e-7■□□□□ 9.4
YBX3P16989 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.213e-7■□□□□ 9.4
YBX3P16989 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC6.79□□□□□ -1.323e-7■□□□□ 9.4
YBX3P16989 DECR1-202ENST00000517301 464 ntTSL 36.49□□□□□ -1.373e-7■□□□□ 9.4
YBX3P16989 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.423e-7■□□□□ 9.4
YBX3P16989 DECR1-219ENST00000524332 645 ntTSL 25.99□□□□□ -1.453e-7■□□□□ 9.4
YBX3P16989 DECR1-204ENST00000517597 897 ntTSL 55.49□□□□□ -1.533e-7■□□□□ 9.4
YBX3P16989 SMYD3-215ENST00000490322 368 ntTSL 33.69□□□□□ -1.823e-7■□□□□ 9.4
YBX3P16989 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.913e-7■□□□□ 9.4
YBX3P16989 FLNC-203ENST00000388853 570 ntTSL 222.42■■□□□ 1.182e-10■□□□□ 9.4
YBX3P16989 CDK8-205ENST00000536792 3032 ntTSL 1 (best)17.94■□□□□ 0.465e-7■□□□□ 9.4
YBX3P16989 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.455e-7■□□□□ 9.4
YBX3P16989 CDK8-206ENST00000625988 795 ntTSL 512.69□□□□□ -0.385e-7■□□□□ 9.4
YBX3P16989 CDK8-203ENST00000477277 1770 ntTSL 38.53□□□□□ -1.045e-7■□□□□ 9.4
YBX3P16989 CDK8-202ENST00000465820 586 ntTSL 37.68□□□□□ -1.185e-7■□□□□ 9.4
YBX3P16989 CDK8-204ENST00000480323 1996 ntTSL 25.13□□□□□ -1.595e-7■□□□□ 9.4
YBX3P16989 KEAP1-204ENST00000588024 576 ntTSL 417.55■□□□□ 0.49e-10■□□□□ 9.4
Retrieved 100 of 29,075 protein–RNA pairs in 147.1 ms