RNA–Protein interactions for RNA: ENST00000466373.1

UFD1-206, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 3,059 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-206ENST00000466373 NISCHQ9Y2I1 1504 aa21.72■■□□□ 1.07
UFD1-206ENST00000466373 SHROOM4Q9ULL8 1493 aa18.66■□□□□ 0.58
UFD1-206ENST00000466373 CCDC180Q9P1Z9 1646 aa18.42■□□□□ 0.54
UFD1-206ENST00000466373 ZCCHC6Q5VYS8 1495 aaKnown RBP18.34■□□□□ 0.53
UFD1-206ENST00000466373 DCAF8L2P0C7V8 631 aa18.28■□□□□ 0.52
UFD1-206ENST00000466373 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
UFD1-206ENST00000466373 DCAF1Q9Y4B6 1507 aa17.72■□□□□ 0.43
UFD1-206ENST00000466373 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
UFD1-206ENST00000466373 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
UFD1-206ENST00000466373 SCRIBQ14160 1630 aa17.4■□□□□ 0.38
UFD1-206ENST00000466373 ABCC9O60706 1549 aa17.32■□□□□ 0.36
UFD1-206ENST00000466373 RSF1Q96T23 1441 aaPredicted RBP17.19■□□□□ 0.34
UFD1-206ENST00000466373 LOC105371045A0A1W2PR82 267 aa17.19■□□□□ 0.34
UFD1-206ENST00000466373 PCGF6Q9BYE7 350 aa17.08■□□□□ 0.33
UFD1-206ENST00000466373 NACADO15069 1562 aa17.08■□□□□ 0.33
UFD1-206ENST00000466373 RB1CC1Q8TDY2 1594 aa17.02■□□□□ 0.32
UFD1-206ENST00000466373 CECR2Q9BXF3 1484 aa17.02■□□□□ 0.31
UFD1-206ENST00000466373 TRIM41Q8WV44 630 aa16.96■□□□□ 0.31
UFD1-206ENST00000466373 HRCP23327 699 aa16.93■□□□□ 0.3
UFD1-206ENST00000466373 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
UFD1-206ENST00000466373 FAM9AQ8IZU1 332 aaPredicted RBP16.92■□□□□ 0.3
UFD1-206ENST00000466373 EHMT2Q96KQ7 1210 aa16.85■□□□□ 0.29
UFD1-206ENST00000466373 WIZO95785 1651 aa16.84■□□□□ 0.29
UFD1-206ENST00000466373 PPARGC1BQ86YN6 1023 aaKnown RBP16.71■□□□□ 0.27
UFD1-206ENST00000466373 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
UFD1-206ENST00000466373 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
UFD1-206ENST00000466373 UNC13AQ9UPW8 1703 aa16.61■□□□□ 0.25
UFD1-206ENST00000466373 PABPN1Q86U42 306 aaKnown RBP eCLIP16.61■□□□□ 0.25
UFD1-206ENST00000466373 SMARCA4P51532 1647 aa16.55■□□□□ 0.24
UFD1-206ENST00000466373 TOP2AP11388 1531 aaKnown RBP16.5■□□□□ 0.23
UFD1-206ENST00000466373 CCDC88BA6NC98 1476 aa16.49■□□□□ 0.23
UFD1-206ENST00000466373 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
UFD1-206ENST00000466373 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
UFD1-206ENST00000466373 SMARCA2P51531 1590 aa16.44■□□□□ 0.22
UFD1-206ENST00000466373 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
UFD1-206ENST00000466373 SOGA1O94964 1423 aa16.3■□□□□ 0.2
UFD1-206ENST00000466373 TTBK1Q5TCY1 1321 aaPredicted RBP16.27■□□□□ 0.2
UFD1-206ENST00000466373 RUSC2Q8N2Y8 1516 aa16.23■□□□□ 0.19
UFD1-206ENST00000466373 ZEB1P37275 1124 aaPredicted RBP16.22■□□□□ 0.19
UFD1-206ENST00000466373 UBTFP17480 764 aaKnown RBP16.2■□□□□ 0.18
UFD1-206ENST00000466373 CSRNP3Q8WYN3 585 aa16.2■□□□□ 0.18
UFD1-206ENST00000466373 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
UFD1-206ENST00000466373 ATAD2BQ9ULI0 1458 aa16.17■□□□□ 0.18
UFD1-206ENST00000466373 WRNQ14191 1432 aaPredicted RBP eCLIP16.16■□□□□ 0.18
UFD1-206ENST00000466373 CEP162Q5TB80 1403 aa16.16■□□□□ 0.18
UFD1-206ENST00000466373 BAZ1BQ9UIG0 1483 aaKnown RBP16.14■□□□□ 0.17
UFD1-206ENST00000466373 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.13■□□□□ 0.17
UFD1-206ENST00000466373 TNIKQ9UKE5 1360 aa16.1■□□□□ 0.17
UFD1-206ENST00000466373 EEA1Q15075 1411 aa16.08■□□□□ 0.17
UFD1-206ENST00000466373 SYNJ1O43426 1573 aa16.08■□□□□ 0.16
UFD1-206ENST00000466373 CCER1Q8TC90 406 aaPredicted RBP16.05■□□□□ 0.16
UFD1-206ENST00000466373 GOLGA3Q08378 1498 aa16.03■□□□□ 0.16
UFD1-206ENST00000466373 RANGAP1P46060 587 aaPredicted RBP16.01■□□□□ 0.15
UFD1-206ENST00000466373 CEP164Q9UPV0 1460 aa15.94■□□□□ 0.14
UFD1-206ENST00000466373 RAPGEF2Q9Y4G8 1499 aa15.89■□□□□ 0.13
UFD1-206ENST00000466373 CLIP1P30622 1438 aa15.89■□□□□ 0.13
UFD1-206ENST00000466373 KIF21BO75037 1637 aa15.87■□□□□ 0.13
UFD1-206ENST00000466373 TOP2BQ02880 1626 aa15.84■□□□□ 0.13
UFD1-206ENST00000466373 NCAPD3P42695 1498 aa15.83■□□□□ 0.12
UFD1-206ENST00000466373 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
UFD1-206ENST00000466373 APLP2Q06481 763 aa15.79■□□□□ 0.12
UFD1-206ENST00000466373 HMGXB3Q12766 1538 aa15.79■□□□□ 0.12
UFD1-206ENST00000466373 VPS8Q8N3P4 1428 aa15.77■□□□□ 0.12
UFD1-206ENST00000466373 BIVM-ERCC5R4GMW8 1640 aa15.76■□□□□ 0.11
UFD1-206ENST00000466373 CUX1P39880 1505 aa15.75■□□□□ 0.11
UFD1-206ENST00000466373 CFTRP13569 1480 aa15.7■□□□□ 0.1
UFD1-206ENST00000466373 PRXQ9BXM0 1461 aa15.68■□□□□ 0.1
UFD1-206ENST00000466373 DIEXFQ68CQ4 756 aaKnown RBP15.66■□□□□ 0.1
UFD1-206ENST00000466373 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
UFD1-206ENST00000466373 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
UFD1-206ENST00000466373 ARAP1Q96P48 1450 aa15.61■□□□□ 0.09
UFD1-206ENST00000466373 KANK4Q5T7N3 995 aaPredicted RBP15.6■□□□□ 0.09
UFD1-206ENST00000466373 SCAF1Q9H7N4 1312 aaKnown RBP15.58■□□□□ 0.09
UFD1-206ENST00000466373 CADPSQ9ULU8 1353 aa15.57■□□□□ 0.08
UFD1-206ENST00000466373 CUX2O14529 1486 aa15.57■□□□□ 0.08
UFD1-206ENST00000466373 ZNF316A6NFI3 1004 aaPredicted RBP15.54■□□□□ 0.08
UFD1-206ENST00000466373 CC2D2AQ9P2K1 1620 aa15.52■□□□□ 0.08
UFD1-206ENST00000466373 IGF1RP08069 1367 aa15.51■□□□□ 0.07
UFD1-206ENST00000466373 PRDM2Q13029 1718 aa15.5■□□□□ 0.07
UFD1-206ENST00000466373 FGD5Q6ZNL6 1462 aa15.5■□□□□ 0.07
UFD1-206ENST00000466373 ARHGAP35Q9NRY4 1499 aa15.5■□□□□ 0.07
UFD1-206ENST00000466373 NEUROD1Q13562 356 aa15.48■□□□□ 0.07
UFD1-206ENST00000466373 ITGAEP38570 1179 aa15.47■□□□□ 0.07
UFD1-206ENST00000466373 CARMIL1Q5VZK9 1371 aa15.46■□□□□ 0.07
UFD1-206ENST00000466373 ACIN1Q9UKV3 1341 aaKnown RBP15.44■□□□□ 0.06
UFD1-206ENST00000466373 FANCD2Q9BXW9 1451 aa15.43■□□□□ 0.06
UFD1-206ENST00000466373 P3H3Q8IVL6 736 aa15.43■□□□□ 0.06
UFD1-206ENST00000466373 NESP48681 1621 aa15.41■□□□□ 0.06
UFD1-206ENST00000466373 ATP1B4Q9UN42 357 aaPredicted RBP15.4■□□□□ 0.06
UFD1-206ENST00000466373 RAD54L2Q9Y4B4 1467 aa15.39■□□□□ 0.05
UFD1-206ENST00000466373 YTHDC1Q96MU7 727 aaKnown RBP15.39■□□□□ 0.05
UFD1-206ENST00000466373 DHX57Q6P158 1386 aaKnown RBP15.38■□□□□ 0.05
UFD1-206ENST00000466373 CCNB3Q8WWL7 1395 aa15.37■□□□□ 0.05
UFD1-206ENST00000466373 RRBP1Q9P2E9 1410 aaKnown RBP15.37■□□□□ 0.05
UFD1-206ENST00000466373 CENPBP07199 599 aaPredicted RBP15.36■□□□□ 0.05
UFD1-206ENST00000466373 MIER1Q8N108 512 aa15.35■□□□□ 0.05
UFD1-206ENST00000466373 GTF3C3Q9Y5Q9 886 aa15.32■□□□□ 0.04
UFD1-206ENST00000466373 POLA1P09884 1462 aaPredicted RBP15.32■□□□□ 0.04
UFD1-206ENST00000466373 TOPBP1Q92547 1522 aa15.31■□□□□ 0.04
UFD1-206ENST00000466373 DNAJC5BQ9UF47 199 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms