Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RNF40O75150 MIR4321-201ENST00000592276 80 ntBASIC16.33■□□□□ 0.2
RNF40O75150 AC008735.3-201ENST00000596646 500 ntBASIC16.33■□□□□ 0.2
RNF40O75150 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
RNF40O75150 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
RNF40O75150 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF40O75150 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF40O75150 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RNF40O75150 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.33■□□□□ 0.2
RNF40O75150 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
RNF40O75150 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RNF40O75150 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF40O75150 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RNF40O75150 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.33■□□□□ 0.2
RNF40O75150 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF40O75150 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
RNF40O75150 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.32■□□□□ 0.2
RNF40O75150 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC16.32■□□□□ 0.2
RNF40O75150 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
RNF40O75150 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.32■□□□□ 0.2
RNF40O75150 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.32■□□□□ 0.2
RNF40O75150 AC119751.2-201ENST00000504529 210 ntBASIC16.32■□□□□ 0.2
RNF40O75150 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.32■□□□□ 0.2
RNF40O75150 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
RNF40O75150 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.32■□□□□ 0.2
RNF40O75150 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 AL365330.1-201ENST00000607459 531 ntBASIC16.32■□□□□ 0.2
RNF40O75150 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC16.32■□□□□ 0.2
RNF40O75150 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF40O75150 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
RNF40O75150 AC097359.2-201ENST00000604992 2389 ntBASIC16.31■□□□□ 0.2
RNF40O75150 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.31■□□□□ 0.2
RNF40O75150 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF40O75150 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF40O75150 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 KRT223P-202ENST00000449164 1292 ntBASIC16.31■□□□□ 0.2
RNF40O75150 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF40O75150 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF40O75150 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.31■□□□□ 0.2
RNF40O75150 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF40O75150 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 SNX29P1-201ENST00000548357 1007 ntBASIC16.31■□□□□ 0.2
RNF40O75150 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 AC133552.6-201ENST00000613406 534 ntBASIC16.31■□□□□ 0.2
RNF40O75150 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RNF40O75150 MIR6775-201ENST00000617557 69 ntBASIC16.31■□□□□ 0.2
RNF40O75150 COX11-210ENST00000639671 696 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms