Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.14□□□□□ -0.15
LDB3O75112 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
LDB3O75112 AC078819.1-201ENST00000547454 765 ntBASIC14.14□□□□□ -0.15
LDB3O75112 AC012085.1-201ENST00000548270 765 ntBASIC14.14□□□□□ -0.15
LDB3O75112 KRT90P-201ENST00000549264 1064 ntBASIC14.14□□□□□ -0.15
LDB3O75112 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
LDB3O75112 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 AC015656.1-201ENST00000624209 3578 ntBASIC14.14□□□□□ -0.15
LDB3O75112 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 LINC01101-201ENST00000622953 1884 ntBASIC14.14□□□□□ -0.15
LDB3O75112 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 CLUHP2-201ENST00000426660 1303 ntBASIC14.14□□□□□ -0.15
LDB3O75112 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LDB3O75112 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.13□□□□□ -0.15
LDB3O75112 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 GPR53P-205ENST00000457298 1084 ntBASIC14.13□□□□□ -0.15
LDB3O75112 ACA64.2-201ENST00000459014 129 ntBASIC14.13□□□□□ -0.15
LDB3O75112 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 RNA5SP486-201ENST00000515961 83 ntBASIC14.13□□□□□ -0.15
LDB3O75112 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.13□□□□□ -0.15
LDB3O75112 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.13□□□□□ -0.15
LDB3O75112 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.13□□□□□ -0.15
LDB3O75112 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.13□□□□□ -0.15
LDB3O75112 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 AC138951.2-201ENST00000623455 1161 ntBASIC14.13□□□□□ -0.15
LDB3O75112 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LDB3O75112 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LDB3O75112 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LDB3O75112 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms