Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
CACNA1FO60840 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC18.48■□□□□ 0.55
CACNA1FO60840 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.47■□□□□ 0.55
CACNA1FO60840 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1FO60840 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1FO60840 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
CACNA1FO60840 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1FO60840 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 AC138627.1-207ENST00000641560 1006 ntBASIC18.47■□□□□ 0.55
CACNA1FO60840 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
CACNA1FO60840 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC18.47■□□□□ 0.55
CACNA1FO60840 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
CACNA1FO60840 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CACNA1FO60840 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CACNA1FO60840 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1FO60840 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1FO60840 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.46■□□□□ 0.55
CACNA1FO60840 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC18.46■□□□□ 0.55
CACNA1FO60840 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1FO60840 AC116345.2-201ENST00000512837 523 ntBASIC18.46■□□□□ 0.55
CACNA1FO60840 SCARNA21-201ENST00000517026 139 ntBASIC18.46■□□□□ 0.55
CACNA1FO60840 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.46■□□□□ 0.55
CACNA1FO60840 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CACNA1FO60840 AL591471.1-201ENST00000621855 229 ntBASIC18.46■□□□□ 0.55
CACNA1FO60840 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CACNA1FO60840 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 AC106881.1-201ENST00000605849 3329 ntBASIC18.46■□□□□ 0.55
CACNA1FO60840 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1FO60840 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.46■□□□□ 0.55
CACNA1FO60840 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC18.46■□□□□ 0.55
CACNA1FO60840 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CACNA1FO60840 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.46■□□□□ 0.55
CACNA1FO60840 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC18.46■□□□□ 0.55
CACNA1FO60840 AL606495.2-201ENST00000605867 535 ntBASIC18.46■□□□□ 0.55
CACNA1FO60840 TUBB8P4-201ENST00000511806 1324 ntBASIC18.46■□□□□ 0.55
CACNA1FO60840 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC18.46■□□□□ 0.55
CACNA1FO60840 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CACNA1FO60840 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.45■□□□□ 0.54
CACNA1FO60840 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.45■□□□□ 0.54
CACNA1FO60840 NUP210P1-202ENST00000504322 710 ntBASIC18.45■□□□□ 0.54
CACNA1FO60840 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC18.45■□□□□ 0.54
CACNA1FO60840 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.45■□□□□ 0.54
CACNA1FO60840 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.45■□□□□ 0.54
CACNA1FO60840 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.45■□□□□ 0.54
CACNA1FO60840 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.45■□□□□ 0.54
CACNA1FO60840 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 AC011498.7-201ENST00000624986 2027 ntBASIC18.45■□□□□ 0.54
CACNA1FO60840 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 USP4-203ENST00000415188 1454 ntTSL 3 BASIC18.45■□□□□ 0.54
CACNA1FO60840 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 AL596257.1-201ENST00000641463 2694 ntBASIC18.45■□□□□ 0.54
CACNA1FO60840 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
CACNA1FO60840 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CACNA1FO60840 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC18.45■□□□□ 0.54
CACNA1FO60840 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CACNA1FO60840 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1FO60840 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1FO60840 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CACNA1FO60840 CYP46A4P-201ENST00000414953 267 ntBASIC18.44■□□□□ 0.54
CACNA1FO60840 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.44■□□□□ 0.54
CACNA1FO60840 TSPY25P-201ENST00000429463 745 ntBASIC18.44■□□□□ 0.54
CACNA1FO60840 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms