Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 AC092337.1-201ENST00000568699 1129 ntBASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 AC022144.1-201ENST00000602255 1580 ntBASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 CICP11-201ENST00000434745 2827 ntBASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC39Q9UFE4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 BASP1P1-201ENST00000430708 665 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC092183.1-201ENST00000469884 875 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC004890.2-204ENST00000481968 304 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 MEIS3P1-201ENST00000495167 958 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC009407.1-201ENST00000568958 598 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC025181.2-201ENST00000606994 802 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 AL356585.2-201ENST00000625078 2396 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 ADAMTS7P1-201ENST00000613213 4793 ntBASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC39Q9UFE4 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms