Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AL627422.1-201ENST00000434104 580 ntBASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 OR2R1P-201ENST00000441404 914 ntBASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 CHCHD2P9-201ENST00000461726 456 ntBASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AC003686.1-201ENST00000550956 1034 ntBASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 AHCYP4-201ENST00000419201 1315 ntBASIC18.72■□□□□ 0.59
CCDC87Q9NVE4 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AL807761.2-201ENST00000422849 729 ntBASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AC018463.1-201ENST00000456674 917 ntBASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AC127024.7-201ENST00000625101 200 ntBASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 KRT8P31-201ENST00000504812 1408 ntBASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC87Q9NVE4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 RPL18AP3-201ENST00000462885 528 ntBASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 AC007326.1-201ENST00000604539 458 ntBASIC18.7■□□□□ 0.58
CCDC87Q9NVE4 AL132780.4-201ENST00000624870 1135 ntBASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms