Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LRRC40Q9H9A6 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AC026434.2-201ENST00000506094 1078 ntBASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 WFDC1-204ENST00000613603 549 ntBASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LRRC40Q9H9A6 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 GRK6P1-201ENST00000400595 1711 ntBASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 EIF3FP3-201ENST00000434851 1086 ntBASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 TERF1P3-201ENST00000505638 1227 ntBASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 AC190387.1-201ENST00000551683 408 ntBASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 CLUHP6-201ENST00000580789 941 ntBASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LRRC40Q9H9A6 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 AC097359.2-201ENST00000604992 2389 ntBASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LRRC40Q9H9A6 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LRRC40Q9H9A6 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms