Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX3-1Q99801 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX3-1Q99801 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.19□□□□□ -0.3
NKX3-1Q99801 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 AC015922.1-201ENST00000421102 1152 ntBASIC13.19□□□□□ -0.3
NKX3-1Q99801 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 AC125807.1-201ENST00000483097 614 ntBASIC13.19□□□□□ -0.3
NKX3-1Q99801 AC067863.1-201ENST00000494933 530 ntBASIC13.19□□□□□ -0.3
NKX3-1Q99801 IGHV3-42-201ENST00000520410 361 ntBASIC13.19□□□□□ -0.3
NKX3-1Q99801 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX3-1Q99801 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX3-1Q99801 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.18□□□□□ -0.3
NKX3-1Q99801 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC138969.3-201ENST00000546612 1459 ntBASIC13.18□□□□□ -0.3
NKX3-1Q99801 AC138932.2-201ENST00000548268 1459 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms