Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 FAM8A3P-201ENST00000427218 844 ntBASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AL589987.1-201ENST00000453380 819 ntBASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AC000095.1-201ENST00000603208 874 ntBASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP4Q8N3C7 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 SPDYE18-201ENST00000510091 1050 ntBASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 AL390754.1-201ENST00000619088 582 ntBASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP4Q8N3C7 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 BEND3P1-201ENST00000421591 1944 ntBASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms