Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP54Q70EL1 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC19.33■□□□□ 0.68
USP54Q70EL1 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP54Q70EL1 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC19.33■□□□□ 0.68
USP54Q70EL1 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC19.33■□□□□ 0.68
USP54Q70EL1 BUD31-205ENST00000456893 512 ntTSL 5 BASIC19.33■□□□□ 0.68
USP54Q70EL1 TP53-221ENST00000615910 1149 ntTSL 5 BASIC19.33■□□□□ 0.68
USP54Q70EL1 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.33■□□□□ 0.68
USP54Q70EL1 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC19.32■□□□□ 0.68
USP54Q70EL1 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.32■□□□□ 0.68
USP54Q70EL1 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC19.32■□□□□ 0.68
USP54Q70EL1 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 AC018638.5-201ENST00000450885 754 ntBASIC19.32■□□□□ 0.68
USP54Q70EL1 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC19.32■□□□□ 0.68
USP54Q70EL1 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC19.32■□□□□ 0.68
USP54Q70EL1 OR2A1-AS1-210ENST00000496968 531 ntBASIC19.32■□□□□ 0.68
USP54Q70EL1 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC19.32■□□□□ 0.68
USP54Q70EL1 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
USP54Q70EL1 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC19.32■□□□□ 0.68
USP54Q70EL1 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP54Q70EL1 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
USP54Q70EL1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP54Q70EL1 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.31■□□□□ 0.68
USP54Q70EL1 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.31■□□□□ 0.68
USP54Q70EL1 OR5BD1P-201ENST00000532527 817 ntBASIC19.31■□□□□ 0.68
USP54Q70EL1 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC19.31■□□□□ 0.68
USP54Q70EL1 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP54Q70EL1 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USP54Q70EL1 KRT8P43-201ENST00000406052 1458 ntBASIC19.31■□□□□ 0.68
USP54Q70EL1 AC011270.2-201ENST00000624293 2550 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC19.3■□□□□ 0.68
USP54Q70EL1 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
USP54Q70EL1 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC19.3■□□□□ 0.68
USP54Q70EL1 AC005357.2-202ENST00000590507 1060 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.3■□□□□ 0.68
USP54Q70EL1 AC006372.4-201ENST00000624122 1543 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC19.3■□□□□ 0.68
USP54Q70EL1 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
USP54Q70EL1 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
USP54Q70EL1 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC19.3■□□□□ 0.68
USP54Q70EL1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 USP4-203ENST00000415188 1454 ntTSL 3 BASIC19.3■□□□□ 0.68
USP54Q70EL1 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.3■□□□□ 0.68
USP54Q70EL1 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC19.3■□□□□ 0.68
USP54Q70EL1 AC025186.1-201ENST00000478174 870 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 AC005740.1-201ENST00000515639 522 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 AL132994.1-201ENST00000554098 400 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.3■□□□□ 0.68
USP54Q70EL1 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC19.3■□□□□ 0.68
USP54Q70EL1 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 AMT-256ENST00000638063 1783 ntTSL 5 BASIC19.3■□□□□ 0.68
USP54Q70EL1 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP54Q70EL1 AC105917.1-201ENST00000506637 2539 ntBASIC19.3■□□□□ 0.68
USP54Q70EL1 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 AC117503.4-201ENST00000623229 1418 ntBASIC19.29■□□□□ 0.68
USP54Q70EL1 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 GSN-215ENST00000545652 2428 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms