Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
LIMK1P53667 AC022616.1-201ENST00000518688 554 ntBASIC14.79□□□□□ -0.04
LIMK1P53667 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LIMK1P53667 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LIMK1P53667 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.79□□□□□ -0.04
LIMK1P53667 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.79□□□□□ -0.04
LIMK1P53667 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LIMK1P53667 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.79□□□□□ -0.04
LIMK1P53667 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC14.79□□□□□ -0.04
LIMK1P53667 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LIMK1P53667 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
LIMK1P53667 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.79□□□□□ -0.04
LIMK1P53667 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LIMK1P53667 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LIMK1P53667 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 TMBIM7P-203ENST00000641617 1718 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LIMK1P53667 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.78□□□□□ -0.04
LIMK1P53667 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.78□□□□□ -0.04
LIMK1P53667 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.78□□□□□ -0.04
LIMK1P53667 AC073150.1-201ENST00000450406 1084 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 AC079112.1-201ENST00000454972 939 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 RCC2P8-201ENST00000502779 1035 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.78□□□□□ -0.04
LIMK1P53667 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 AC100827.2-201ENST00000563214 1194 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 MIR6842-201ENST00000612539 65 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 AC242376.2-201ENST00000619355 883 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 AC138466.3-201ENST00000619983 221 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LIMK1P53667 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.78□□□□□ -0.04
LIMK1P53667 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.78□□□□□ -0.04
LIMK1P53667 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIMK1P53667 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.78□□□□□ -0.04
LIMK1P53667 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LIMK1P53667 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.04
LIMK1P53667 AC026748.1-201ENST00000624349 3251 ntBASIC14.77□□□□□ -0.04
LIMK1P53667 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.77□□□□□ -0.04
LIMK1P53667 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
LIMK1P53667 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
LIMK1P53667 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.77□□□□□ -0.04
LIMK1P53667 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
LIMK1P53667 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
LIMK1P53667 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.77□□□□□ -0.04
LIMK1P53667 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.77□□□□□ -0.04
LIMK1P53667 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.77□□□□□ -0.04
LIMK1P53667 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.77□□□□□ -0.04
LIMK1P53667 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIMK1P53667 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIMK1P53667 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms