Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
TNFP01375 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TNFP01375 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TNFP01375 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TNFP01375 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.61□□□□□ -0.07
TNFP01375 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TNFP01375 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.61□□□□□ -0.07
TNFP01375 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 AC138035.3-201ENST00000622706 2791 ntBASIC14.6□□□□□ -0.07
TNFP01375 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 DPM3-202ENST00000368399 517 ntBASIC14.6□□□□□ -0.07
TNFP01375 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 HIST2H2BC-201ENST00000498492 580 ntBASIC14.6□□□□□ -0.07
TNFP01375 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.6□□□□□ -0.07
TNFP01375 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.6□□□□□ -0.07
TNFP01375 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 AL606495.2-201ENST00000605867 535 ntBASIC14.6□□□□□ -0.07
TNFP01375 BX088702.1-201ENST00000610784 235 ntBASIC14.6□□□□□ -0.07
TNFP01375 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
TNFP01375 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
TNFP01375 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
TNFP01375 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 CICP6-201ENST00000457191 2729 ntBASIC14.59□□□□□ -0.07
TNFP01375 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 AC004899.1-201ENST00000424687 1714 ntBASIC14.59□□□□□ -0.07
TNFP01375 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
TNFP01375 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 MIR769-201ENST00000390225 118 ntBASIC14.59□□□□□ -0.07
TNFP01375 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 AC016700.1-201ENST00000429424 312 ntBASIC14.59□□□□□ -0.07
TNFP01375 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 ALG3P1-201ENST00000508806 1114 ntBASIC14.59□□□□□ -0.07
TNFP01375 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.59□□□□□ -0.07
TNFP01375 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.59□□□□□ -0.07
TNFP01375 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.59□□□□□ -0.07
TNFP01375 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.59□□□□□ -0.07
TNFP01375 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
TNFP01375 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TNFP01375 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.59□□□□□ -0.07
TNFP01375 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
TNFP01375 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.58□□□□□ -0.07
TNFP01375 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
TNFP01375 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TNFP01375 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.58□□□□□ -0.07
TNFP01375 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
TNFP01375 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
TNFP01375 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TNFP01375 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms