Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.52■□□□□ 0.39
CCDC39Q9UFE4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC39Q9UFE4 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CCDC39Q9UFE4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.52■□□□□ 0.39
CCDC39Q9UFE4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.52■□□□□ 0.39
CCDC39Q9UFE4 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC39Q9UFE4 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 COL6A4P2-202ENST00000504443 2753 ntBASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AC114501.2-201ENST00000439631 535 ntBASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AC106028.4-201ENST00000614509 607 ntBASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 AC027612.1-201ENST00000445234 2395 ntBASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC39Q9UFE4 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 AL512638.1-201ENST00000457493 794 ntBASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 MST1P2-201ENST00000457982 2291 ntBASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 AC099521.3-201ENST00000624251 2938 ntBASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC39Q9UFE4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 AP001267.2-201ENST00000532619 2086 ntBASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC39Q9UFE4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms